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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009147780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 361aa MW: 39964.7 Da PI: 7.1033 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.8 | 3.4e-12 | 298 | 343 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ ++ + a++L +Av+YIk+Lq XP_009147780.1 298 SIAERVRRTKISERMRKLQDLVPNM----DTQTNTADMLDLAVQYIKDLQ 343 689*********************7....79******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.072 | 292 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-16 | 295 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.96E-12 | 296 | 347 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.9E-15 | 297 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-9 | 298 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-13 | 298 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MESEFQQHHF LLHDHQHQRP PRASGLVRYQ SAPSSYFSSF GESIEEFLDR PTSPETERIL 60 SGFLQTTDTS NNVDSFLHHT FSETENKPPE VKTEEETVVD DIPAMEVGEM APPVSTGYAS 120 VVRSLGQNKR PRDDRTPASN LARHNSSPAG LFSSIDVETA YAAVMKNMGG FGVMNMSNNS 180 TEASSLTPRS KLPPPSMGSI PEIDDVKPVF SSRLPPRTLS GGFNQGSASS KRMAIARTQS 240 GGLDQYKTKD EDSSASRRPP LAHHMSLPKS LSDIEQLLSD SIPCKIRAKR GCATHPRSIA 300 ERVRRTKISE RMRKLQDLVP NMDTQTNTAD MLDLAVQYIK DLQEQVKGLE ESRARCRCSC 360 A |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00195 | DAP | Transfer from AT1G51140 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009147780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY034941 | 1e-119 | AY034941.1 Arabidopsis thaliana unknown protein (At1g51140) mRNA, complete cds. | |||
GenBank | AY063120 | 1e-119 | AY063120.1 Arabidopsis thaliana unknown protein (At1g51140) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009147780.1 | 0.0 | PREDICTED: transcription factor bHLH122 | ||||
Swissprot | Q9C690 | 0.0 | BH122_ARATH; Transcription factor bHLH122 | ||||
TrEMBL | M4DQV3 | 0.0 | M4DQV3_BRARP; Uncharacterized protein | ||||
STRING | Bra018896.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10547 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51140.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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