PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009147496.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 654aa MW: 73551.2 Da PI: 5.3631 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.3 | 8.7e-30 | 266 | 323 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK vkg+++prsYY+C+++gC +kk+ver+a+d +++ +tY g+H h XP_009147496.1 266 NDGHRWRKYGQKIVKGNPNPRSYYKCSHKGCIMKKHVERAADDLRMLLVTYYGKHGHA 323 7******************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.8E-30 | 251 | 325 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.364 | 260 | 325 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.23E-26 | 260 | 325 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-33 | 265 | 324 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.9E-24 | 266 | 322 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 654 aa Download sequence Send to blast |
MSDYGDGNFM DMVSSRWAPP LSTSLSDNGL NPISDIFLQT NQSKQRPGLV DRVAARIGRN 60 IPPIRTDNLS PCAVVFKDPK TVPFGIEISP GLSPSVMLQS RSQLINPYSF PNDEPPETVE 120 NSGDDHAKTM IFNKDVPYQP MHFDLPPQEA LIPSHVDPIG APLVASFESE VADDTDTKLM 180 SLDDESESQD EEESNEDEDT DDPSKLGRKR RIDEEEDDDI ADEHEVKPSS PKRRKYDEVS 240 NMMTALRASN NPRVRLRMET EEAQPNDGHR WRKYGQKIVK GNPNPRSYYK CSHKGCIMKK 300 HVERAADDLR MLLVTYYGKH GHAAPLARSS SSSGPKNLYR SSVPARLGRP PFSSSSAAQD 360 MRSFPYPSAS APRDMKRFGY PSALAPQAMR PFPSSLNPGV DMTHLYKTGL SKLPSLPVNQ 420 NHGFMDQNAE PWVNQNHGFM GQNAEPQVNQ NHGFMAQNAE PWVNQNHGFM GQNAEPRVNQ 480 NHGFMSQNAE PQVNQNHGFM GQNAEPWVNQ NHGFMGQNAE PRVNQNHGFM GENVEPQVNQ 540 NHGFMGQNVE PQVNQNHGFM GQNDEPWLNQ NHGFMGQNDE PWLNQNHGLM DQNDEPWVNQ 600 NHGFIGQNDE PWLNQNYGFM GQNDEPKTDH VIPDGTEVYK GLRERMLANL GVKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-21 | 266 | 325 | 18 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-21 | 266 | 325 | 18 | 77 | Probable WRKY transcription factor 4 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009147496.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009147496.1 | 0.0 | PREDICTED: probable WRKY transcription factor 10 | ||||
TrEMBL | M4FA92 | 0.0 | M4FA92_BRARP; Uncharacterized protein | ||||
STRING | Bra038006.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20376 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55600.1 | 5e-43 | WRKY DNA-binding protein 10 |