PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009147458.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 364aa MW: 40379.1 Da PI: 6.2946 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.1 | 1.4e-31 | 193 | 247 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rW+peLH++F+eav++L G+ekAtPk+++++m+v+gLt+++vkSHLQkYR+ XP_009147458.1 193 KPRMRWSPELHDCFLEAVKKLDGPEKATPKAVMKMMNVEGLTIYQVKSHLQKYRI 247 79****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.143 | 190 | 250 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-29 | 191 | 248 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.5E-18 | 192 | 248 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.1E-25 | 193 | 248 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.6E-10 | 195 | 246 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 9.3E-22 | 285 | 331 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MNSHSLLSID GGNTSCSSSS LSPLHNFHPT ETTTRSFQFK PSHFSNGSFS RCSSFCNLSS 60 SSSSDTQKHL GSTLPFLPNP LTENERSPAA ASFTDGDLLS IPYEEEVDPS FLSLHGDGGF 120 QDVDNFSLSE EQMELQFLSD ELQLAITDRA QTPRLDEIYQ VTGSSPGQNC VPAAMPVLSQ 180 QPSPGGTEAV NQKPRMRWSP ELHDCFLEAV KKLDGPEKAT PKAVMKMMNV EGLTIYQVKS 240 HLQKYRIAKH MPERKEEKKS GGNPEDKKPA SNTNGEANGR KKGAIQITEA LRMQMEVQKQ 300 LHQQLEVQRS LQLRIEEHAK YLEKILDEQR KATPTSKQES QLSSASSAKD DECQASPKRP 360 RIEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-22 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-22 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-22 | 193 | 250 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-22 | 193 | 250 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-22 | 193 | 250 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-22 | 193 | 250 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-22 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-22 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-22 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-22 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-22 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-22 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009147458.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009147458.1 | 0.0 | PREDICTED: myb family transcription factor PHL6-like | ||||
Swissprot | Q949U2 | 1e-114 | PHL6_ARATH; Myb family transcription factor PHL6 | ||||
TrEMBL | M4FAB9 | 0.0 | M4FAB9_BRARP; Uncharacterized protein | ||||
STRING | Bra038033.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19136 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 1e-106 | G2-like family protein |
Publications ? help Back to Top | |||
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