 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
XP_009147412.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
Family |
HD-ZIP |
Protein Properties |
Length: 272aa MW: 31490.9 Da PI: 6.51 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009147412.1 | genome | NCBI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 56.8 | 3.8e-18 | 74 | 126 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+ +++ eq+++Le+ Fe ++++ e++ +LAk lg++ rq+ +WFqNrRa++k
XP_009147412.1 74 KKRLQLEQVKVLEKSFELGNKLDPERKIQLAKALGMQPRQIAIWFQNRRARWK 126
4457889*********************************************9 PP
|
2 | HD-ZIP_I/II | 125.4 | 2.6e-40 | 72 | 164 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekk+rl+ eqvk+LE+sFe +kL+perK +la++Lg+qprq+a+WFqnrRAR+kt+qlE+dy++Lk+++d+lk++n++L +++++L +e+++
XP_009147412.1 72 EKKKRLQLEQVKVLEKSFELGNKLDPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFDSLKSDNDSLLAHNKKLLAEVMS 164
69*************************************************************************************999875 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 272 aa
Download sequence Send
to blast |
MAFPQHGFMF QQLHEDISPD QLPSCLPPHP FNGGGNYMMN RSMSLTNVRD DPHQSVDEEN 60 LSDDGSHMML GEKKKRLQLE QVKVLEKSFE LGNKLDPERK IQLAKALGMQ PRQIAIWFQN 120 RRARWKTRQL ERDYDSLKKQ FDSLKSDNDS LLAHNKKLLA EVMSLRNKDY NEASIIKREA 180 EASWSNNGST ENSSDINLEI PRETTTTHVN TIKNLFPSSI PSSTHHQDHH HQNNEMVQEE 240 SFCNMFNGID ETTSAGYWGW SDPNHNHHHQ FN
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed 3 day after germination (DAG) in first rosette leaf primordia around the veins in the apical part of the leaf and close to the midvein in the basal part of the leaf. At later stage, expressed in new forming veins, and veins and fascicular cambium of mature leaves. {ECO:0000269|PubMed:12644682}. |
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:12644682}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK228890 | 0.0 | AK228890.1 Arabidopsis thaliana mRNA for putative homeobox-leucine zipper protein, complete cds, clone: RAFL16-20-K05. |
GenBank | AY087631 | 0.0 | AY087631.1 Arabidopsis thaliana clone 3722 mRNA, complete sequence. |
GenBank | BT029221 | 0.0 | BT029221.1 Arabidopsis thaliana At3g01220 mRNA, complete cds. |