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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009147399.1 |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
MYB |
Protein Properties |
Length: 360aa MW: 41179.4 Da PI: 8.7171 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009147399.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 57 | 4.4e-18 | 56 | 103 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
XP_009147399.1 56 KGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNYL 103
79********************************************97 PP
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2 | Myb_DNA-binding | 54.5 | 2.7e-17 | 109 | 154 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
XP_009147399.1 109 RGKFTVQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 154
89********************.*********.************996 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 360 aa
Download sequence Send
to blast |
MPIHVKDQEK GSLQNLNRDI FCCVSPLLXI RAKPREQILW IIMFTSPCCD KDGLKKGPWT 60 PEEDQKLLAY IEEHGHGSWR SLPEKAGLQR CGKSCRLRWT NYLRPDIKRG KFTVQEEQTI 120 IQLHALLGNR WSAIATHLPK RTDNEIKNYW NTHLKKRLVK MGIDPVTHKH KNETLLSSTG 180 QSKNLATLSH MAQWESARLE AEARLARESK LLHVQHHRNN KPAAPDYCLA HKSSSTNWTK 240 PNQGNGDQQL ESPTSTVTFS ENLPLMIMHL GIPTENRNSR VAVSSSIKDS DHDWMKQINC 300 PKEGIEEGFT SLLLRDSVDR SLSAGKNDES EYSYYEDNKN YWNSILSLVD SSPSHSPTMF
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}. |
Functional Description ? help
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Source |
Description |
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KC966733 | 0.0 | KC966733.1 Brassica napus MYB transcription factor 106 (MYB106.1) mRNA, complete cds. |