PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009147393.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 1082aa    MW: 119993 Da    PI: 9.7505
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009147393.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.4e-31198254259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK++kg e+prsYYrCt+ +Cpvkkkvers+ d+++++i+Y+g+H+he
  XP_009147393.1 198 DDGYNWRKYGQKPIKGCEYPRSYYRCTHVNCPVKKKVERSS-DGQITQIIYKGQHDHE 254
                     8****************************************.***************8 PP
2WRKY1031.6e-32342400159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+C+v+k+ver+++d k+v++tYeg+Hnh+
  XP_009147393.1 342 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTANCTVRKHVERASTDVKAVITTYEGKHNHD 400
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-28189256IPR003657WRKY domain
SuperFamilySSF1182903.92E-25195256IPR003657WRKY domain
SMARTSM007741.1E-35197255IPR003657WRKY domain
PROSITE profilePS5081124.076198256IPR003657WRKY domain
PfamPF031062.3E-24198253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-35327402IPR003657WRKY domain
SuperFamilySSF1182901.83E-28334402IPR003657WRKY domain
PROSITE profilePS5081137.711337402IPR003657WRKY domain
SMARTSM007741.3E-37342401IPR003657WRKY domain
PfamPF031061.0E-24343400IPR003657WRKY domain
SuperFamilySSF561127.42E-90559855IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.206.3E-31559662No hitNo description
PfamPF000693.2E-70564849IPR000719Protein kinase domain
SMARTSM002206.0E-94564849IPR000719Protein kinase domain
CDDcd078401.24E-136564849No hitNo description
PROSITE profilePS5001145.898564849IPR000719Protein kinase domain
PROSITE patternPS001070570593IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.106.0E-57663917No hitNo description
PROSITE patternPS001080684696IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1082 aa     Download sequence    Send to blast
MAVEDDVSSM RTTTLVAPTR PTITVPQRPP AIETAAYFFG GGEGLSLSPG PLSFVSSLFV  60
DSFPDVLTPD NQRTTSFSQL LAGAMSVSPG SGRSTAGMIA GGGPLFTIPS GLSPSSLLTS  120
PMFFPPQQSP TQTVFIQPQS QPKRPDSFPN QMPPSTSTAV HGRRSCKAPQ ADRYNNPAAN  180
NNNTNRSYNV VNVDKPADDG YNWRKYGQKP IKGCEYPRSY YRCTHVNCPV KKKVERSSDG  240
QITQIIYKGQ HDHERPQNRR GGGGGVRDSG EIGDIHYIGG VGHIESSDDS GYANDHDNDN  300
DDDNEDIPGS KKRKIDGGVS TTHRSVTEPK IVVQTRSEVD LLDDGYRWRK YGQKVVKGNP  360
HPRSYYKCTT ANCTVRKHVE RASTDVKAVI TTYEGKHNHD VPAARNGTAA ISAIAGTSDH  420
HRIVLPALDP FTRPGSILTP PGNFLTISSS IMGCFNSKHS SPPPRPIRRR SDTAANRGHP  480
QNTHKPHVLP TPPSHRRVVN SSPKKHRNND DDAPRSKTTG VSLRSGLPHG NVEAEQVAAG  540
WPSWLTSAAP EAVHGLVPLR AEDFEKREKI GQGTYSNVFR ACEVSTGRVM ALKKIRVQNF  600
DTENIRFIAR EIMILRRLDH PNIMKLEGII ASRNSNSMYF VFDYMEHDLE GLCSSPDINF  660
TEAQIKCYMQ QLLLAVEHCH LRGIMHRDIK AANILVNNKG VLKLADFGLA NIVTPRNKNQ  720
LTSRVVTLWY RAPELLMGST SYSVSVDLWS VGCVFAEILT GRPPLKGRTE IEQLHKIYKL  780
CGSPDEELWR NNKLHPQTKM FGQQHQYEGC LRETFEEFPK TAVNLLENLF SIDPEKRGTA  840
SSALMSEYFN TKPYACDPST LPKYPPNKEM DAKYREELQR RRRATIKKRD NLVSKKTGKS  900
RRTIKDPLSK LPTQQEAKKE AETEIIVQTP SETSQATTRS EFPYTALSQA TAPASGFAWA  960
GAKKRKENDA ASTLTYNQPA GSASHVSGMS MAFAKNTFGL TINENRPFLR PHVSLDSSGD  1020
ILLYPNAHHK KEEDNMSQLN SDLRNVGANP KIFQTNGMNE ILRRTESDAR VAVRRPPRIE  1080
RG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5efq_A2e-7057089219345Cyclin-dependent kinase 13
5efq_C2e-7057089219345Cyclin-dependent kinase 13
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009147393.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300650.0KF430065.1 Brassica rapa WRKY transcription factor 58 (WRKY58) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288975.10.0probable WRKY transcription factor 58
TrEMBLM4FDH60.0M4FDH6_BRARP; Uncharacterized protein
STRINGBra039147.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13105810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-133WRKY DNA-binding protein 58