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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009146876.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
Trihelix |
Protein Properties |
Length: 419aa MW: 47710 Da PI: 6.914 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009146876.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 70.3 | 3.6e-22 | 110 | 214 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sess 76
+Wt+ +v++Li a+ +++++ + + +kk++W++vs++m e+gf++sp+qC++k+++lnkryk+++++ +++t + ++
XP_009146876.1 110 KWTDTMVRLLIMAVFYIGDEAGGALggdqtdakkkiitggmmlQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGRGTaCHVV 204
7**************8888887542334456677888899999**********************************************548889 PP
trihelix 77 stcpyfdqle 86
++ +++ ++
XP_009146876.1 205 ENQGLLEGMD 214
8888888776 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Pfam | PF13837 | 4.6E-20 | 108 | 240 | No hit | No description |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010629 | Biological Process | negative regulation of gene expression |
GO:1900037 | Biological Process | regulation of cellular response to hypoxia |
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
Protein Sequence Length: 419 aa
Download sequence Send
to blast |
MESNVMFTGF SPTMLSLETP QNPPNPVQFQ HPHPHPYTAA SDQQTHQQPM KPLYPYAAKA 60 KQLSPISVGG GGGGGEEDDR GSGSGSGCHP EDSAGTTDGK RKISPWHRMK WTDTMVRLLI 120 MAVFYIGDEA GGALGGDQTD AKKKIITGGM MLQKKGKWKS VSRAMVEKGF SVSPQQCEDK 180 FNDLNKRYKR VNDILGRGTA CHVVENQGLL EGMDHLTPKL REEVKKLLNS KHLFFKEMCA 240 YHNSCGHLDQ PGLMNLVPVQ SKPDFQMARI VEREEEEESD MAEDSETEIE DTDEEEEEET 300 SKKRRVSAAV KRMREETARV LDDPGKSAWE KKEWMRRKAL EIEERKVGYE WEAVEMEKQR 360 VKWVRYRSKK EREMEKAKLE NQRRSLETER MVLVLRRREI ELTELQLAGK RVDPSSATG
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G10040.1 | 0.0 | sequence-specific DNA binding transcription factors |