PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009146808.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 286aa MW: 31258.8 Da PI: 7.0994 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.2 | 9e-29 | 83 | 136 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+a ++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl XP_009146808.1 83 RPRLVWTPQLHKRFVDAGAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 136 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.73E-19 | 80 | 140 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.014 | 80 | 139 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-29 | 82 | 141 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-22 | 84 | 136 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-5 | 86 | 135 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MREDDSDWFS RWEQDLPSPD ELIPLSQSLI SPDLALAFDI RSPGQQPHHH HPSTPQANSS 60 AEFAADSSDL GGAGDEPART LKRPRLVWTP QLHKRFVDAG AHLGIKNAVP KTIMQLMSVD 120 GLTRENVASH LQKYRLYLKR MQGGGLSSGG GGGSDPATDR LFASSPVPAH FLHPNRSDHF 180 MPSFVPIATL QQQQQMVAAA AANSHLQPPQ FHHRSQIAAG HFGTPTANGK FDASFLARQT 240 QTQTQTQQRM STPTLHSPVS NYVEDLESAN AIGGRTVLTL FPTRED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 1e-31 | 83 | 139 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.14974 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269|PubMed:20331973}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009146808.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009146808.1 | 0.0 | PREDICTED: transcription factor PCL1 | ||||
Swissprot | O22210 | 2e-64 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | M4EM46 | 0.0 | M4EM46_BRARP; Uncharacterized protein | ||||
STRING | Bra029866.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1549 | 27 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 1e-124 | G2-like family protein |
Publications ? help Back to Top | |||
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