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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009146752.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
Trihelix |
Protein Properties |
Length: 261aa MW: 29081.7 Da PI: 6.3181 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009146752.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 45.3 | 2.3e-14 | 25 | 107 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W+++ + +Liea ++ +l+rg+l++++W+ev++++ g ++ +qCk++++ l+k+yk +k+ + s++ +fd+l+
XP_009146752.1 25 WSEDATATLIEAWGDRYVHLSRGNLRQNDWKEVADAVnsrhGNNGRPKTDVQCKNRIDTLKKKYKTEKAKPSP------SSWCFFDKLD 107
*************************************9776677788999*****************998886......4699999996 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 261 aa
Download sequence Send
to blast |
MDTTPETQSK SGGSSRLPPG REDWWSEDAT ATLIEAWGDR YVHLSRGNLR QNDWKEVADA 60 VNSRHGNNGR PKTDVQCKNR IDTLKKKYKT EKAKPSPSSW CFFDKLDFLI GPVALKKSTA 120 AGPAGVFKSP STKAGLKLNQ AGSISSGSSL DDDDDDDDDD VEGDWGFVAR KHRRVEDEDL 180 CPDPGEGSSC RELARAILKL GEVYERIESA KQGMMIELEK QRMEAAKEIE LQRMNMLMDM 240 QMELEKSKLG KRRAAASGKK L
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC189253 | 9e-74 | AC189253.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019N06, complete sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G11100.1 | 1e-114 | sequence-specific DNA binding transcription factors |