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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009146725.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
MYB |
| Protein Properties |
Length: 499aa MW: 55272 Da PI: 5.8618 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009146725.1 | genome | NCBI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 47.3 | 4.9e-15 | 35 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT Ed +l+++v+++G g+W+++ ++ + R++k+c++rw ++l
XP_009146725.1 35 KGPWTSTEDGILINYVRKHGEGNWNAVQKYTSLARCGKSCRLRWANHL 82
79******************************************9986 PP
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| 2 | Myb_DNA-binding | 49.6 | 8.8e-16 | 88 | 131 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g++++eE+ l+v+ ++++G++ W+ a++++ gRt++++k++w++
XP_009146725.1 88 KGAFSQEEERLIVQMHAKMGNK-WAQMAEHLP-GRTDNEIKNYWNT 131
799*******************.*********.***********96 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0043068 | Biological Process | positive regulation of programmed cell death |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0045926 | Biological Process | negative regulation of growth |
| GO:0048235 | Biological Process | pollen sperm cell differentiation |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 499 aa
Download sequence Send
to blast |
MSYTAESDDD GMHSPAGDSI GYGCKSRGKG SVLKKGPWTS TEDGILINYV RKHGEGNWNA 60
VQKYTSLARC GKSCRLRWAN HLRPNLKKGA FSQEEERLIV QMHAKMGNKW AQMAEHLPGR 120
TDNEIKNYWN TRIKRRHRAG LPLYPPELHV EDLQWSEEYI TSNVTRVNRR RHHQDILQLG 180
NSKADVLFDD LNFATSLLPG ASDVLDMFTC NMLGTGASSS PYESYMPPIL PSPKQLRESG 240
SLFPMCSSNI KQEFHSPEPF QNPRSCSISP CDVGHHSPYG NQHPSDVMIS DSHAFTDGML 300
PTSKPLFGAV KLELPSFQYS ETSGFDQWKT TPSPPHSDPL DSVDAYIQSP PPLEIEKDES 360
NCFSSCDTGL LDMLLPNAKI KTSAKRSLAL PEIPIPTQLS AGENSPGNVV KTEELDQVWE 420
PKRVDITRPD VLLASSWLDQ QGCFGIVRDS SNMSDALALL LGGEDIENSY VTVGSSSSGQ 480
AQQGVESCTW TNMPPVWSL
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In germinating seeds, present in the root tip and in a linear array of up to 20 to 30 cells above the root tip. Strongly expressed in the inflorescence apex, and, to some extent, in the inflorescence stem, the vascular tissue, and the vascular tissue in leaf primordia (PubMed:11743113). In flowers, expressed in sepals, style, receptacle, anther filaments, and connective but not in anthers themselves (PubMed:15722475). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:15722475}. |
| Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots (e.g. root tips), stems, pollen, shoot apices, flowers and floral shoot tips, and, to a lower extent, in leaves and siliques. {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:24278028}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator of alpha-amylase expression that binds to 5'-CAACTGTC-3' motif in target gene promoter (PubMed:11743113). In vegetative tissues, inhibits growth by reducing cell proliferation. Promotes the expression of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. Together with MYB33 and MYB101, promotes the programmed cell death (PCD) the vacuolation of protein storage vacuoles (PSVs) in the aleurone layers during seed germination (PubMed:20699403). Together with MYB33, facilitates anther and tapetum development (PubMed:15722475). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:20699403}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by microRNA159 (miR159a and miR159b) in vegetative tissues (PubMed:20699403, PubMed:17916625, PubMed:15226253). Specific expression in floral organs and in the shoot apices is regulated via miR159-mediated degradation (PubMed:15722475). Slightly induced by ethylene and salicylic acid (PubMed:16463103). {ECO:0000269|PubMed:15226253, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17916625, ECO:0000269|PubMed:20699403}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189547 | 0.0 | AC189547.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004P05, complete sequence. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Allen RS, et al.
Genetic analysis reveals functional redundancy and the major target genes of the Arabidopsis miR159 family.
Proc. Natl. Acad. Sci. U.S.A., 2007. 104(41): p. 16371-6
[PMID:17916625] - Li J,Reichel M,Millar AA
Determinants beyond both complementarity and cleavage govern microR159 efficacy in Arabidopsis.
PLoS Genet., 2014. 10(3): p. e1004232
[PMID:24626050] - Li Y,Alonso-Peral M,Wong G,Wang MB,Millar AA
Ubiquitous miR159 repression of MYB33/65 in Arabidopsis rosettes is robust and is not perturbed by a wide range of stresses.
BMC Plant Biol., 2016. 16(1): p. 179
[PMID:27542984] - Liu B,De Storme N,Geelen D
Gibberellin Induces Diploid Pollen Formation by Interfering with Meiotic Cytokinesis.
Plant Physiol., 2017. 173(1): p. 338-353
[PMID:27621423] - Zheng Z, et al.
Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
Plant Physiol., 2017. 174(3): p. 1764-1778
[PMID:28515145] - Xue T,Liu Z,Dai X,Xiang F
Primary root growth in Arabidopsis thaliana is inhibited by the miR159 mediated repression of MYB33, MYB65 and MYB101.
Plant Sci., 2017. 262: p. 182-189
[PMID:28716415] - Kim MH, et al.
Poplar MYB transcription factor PtrMYB012 and its Arabidopsis AtGAMYB orthologs are differentially repressed by the Arabidopsis miR159 family.
Tree Physiol., 2018. 38(6): p. 801-812
[PMID:29301041]
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