PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009146592.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 228aa MW: 26223.8 Da PI: 8.7259

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009146592.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.1	9.7e-34	23	77	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av++LGG++kAtPkti+++m vkgLtl+h+kSHLQk+Rl XP_009146592.1 23 KPRLRWTAELHERFVDAVTHLGGPDKATPKTIMRVMAVKGLTLYHLKSHLQKFRL 77 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.5E-32	20	78	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.965	20	80	IPR017930	Myb domain
SuperFamily	SSF46689	6.63E-17	22	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-24	23	78	IPR006447	Myb domain, plants
Pfam	PF00249	9.8E-7	25	75	IPR001005	SANT/Myb domain
Pfam	PF14379	2.6E-14	122	162	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MMQSREERRA ESPSGLVLTT DPKPRLRWTA ELHERFVDAV THLGGPDKAT PKTIMRVMAV 60 KGLTLYHLKS HLQKFRLGKQ PHKEHSHGHS TNIRDTNRAS MLDLQRNVVF STPHIIGRNM 120 NEMQMEVKRR IEEEVEVERQ VNQRIEAQGK YMESMLEKAC ETQEASLTKD YSTLFFNNTS 180 PLPIPWFEDH FPSSSSMDST LNLSDISLNF SLQDSRSSIT KNRTVCLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-19	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-19	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-19	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-19	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269\|PubMed:15923329}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009146592.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189335	1e-180	AC189335.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039A19, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009146592.1	1e-172	PREDICTED: LOW QUALITY PROTEIN: myb family transcription factor PHL12
Swissprot	Q8VYI2	1e-145	PHLC_ARATH; Myb family transcription factor PHL12
TrEMBL	A0A397ZHR3	1e-169	A0A397ZHR3_BRACM; Uncharacterized protein
STRING	Bo5g133200.1	1e-152	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13745	17	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12730.1	1e-123	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]