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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009146571.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
NAC |
Protein Properties |
Length: 308aa MW: 35632.8 Da PI: 7.0273 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009146571.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 154.1 | 6.1e-48 | 25 | 153 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
pGfrFhPtdeelv +yL +kv kk +++e+i+++diyk++PwdLp + +++eke yfF+kr +ky+++ r+nr+t sg+Wkatg dk+++
XP_009146571.1 25 LPGFRFHPTDEELVGFYLSQKVLLKKsSKIDEIISQIDIYKFDPWDLP-RSRHTEKESYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPIYLD 118
59*******************887774778888***************.5566789**************************************8 PP
NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
+++++glkktLv+y g a kg+ktdW+mhe+rl
XP_009146571.1 119 gsSKAVIGLKKTLVYYIGGAGKGSKTDWMMHEFRL 153
666677***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 308 aa
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to blast |
MEEMMGSWDK RREEQEEEEE QVLKLPGFRF HPTDEELVGF YLSQKVLLKK SSKIDEIISQ 60 IDIYKFDPWD LPRSRHTEKE SYFFCKRGRK YRNSIRPNRV TGSGFWKATG IDKPIYLDGS 120 SKAVIGLKKT LVYYIGGAGK GSKTDWMMHE FRLPTANDTI PGGSTSTHRS PTPSSLLHAE 180 VWTLCRIFKR NASSRKYTPD SKELASWERV KPQQSNNREA AYISFGDNES STNKINVMES 240 KENNERNVFQ LHQTPHPHQP IPMEYTSSTQ VDNTVPHISN DNNMDDVNYE NWDELRSVVE 300 FAFGPSSY
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 4e-44 | 15 | 196 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-44 | 15 | 196 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-44 | 15 | 196 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-44 | 15 | 196 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-44 | 15 | 196 | 10 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-44 | 15 | 196 | 10 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-44 | 15 | 196 | 10 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-44 | 15 | 196 | 10 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-44 | 15 | 196 | 10 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-44 | 15 | 196 | 10 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-44 | 15 | 196 | 10 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-44 | 15 | 196 | 10 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-44 | 15 | 196 | 7 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-44 | 15 | 196 | 7 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC189335 | 1e-118 | AC189335.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039A19, complete sequence. |
Publications
? help Back to Top |
- Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] - Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] - Shahnejat-Bushehri S, et al.
Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] - Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]
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