PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146421.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 510aa    MW: 57145.2 Da    PI: 4.5471
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS253.76.7e-781495102374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilkf 93 
                     ++lL  cA a+++++ +++q++++ lselas+ gd+++Rla++ + AL+++++       + +p+s+ +   s+e+ +++k+   f+evsP++ +
  XP_009146421.1 149 EQLLNPCALAITARNSSRVQHYICVLSELASSCGDSNHRLASFGLCALKKHIST------SFVPSSTLT-FASAEVKMFQKTllkFYEVSPWFAL 236
                     689**************************************************9......444444444.445555555555678********** PP

            GRAS  94 shltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg....skeeleetgerLakfAeelgvpfefn 179
                      + +aN+aIl+ +++e    + +Hi+D+++s+G+QWp+Ll+aL +Rpegpp ++RiT+v++ +++          +++++L  fA++l+++++++
  XP_009146421.1 237 PNNMANSAILQILSQEprdkTDLHILDIGVSHGMQWPTLLEALCCRPEGPPlQVRITVVSDLTADipfsVGPPSYNYASQLIGFARSLNINLQIS 331
                     ***************98877778************************99999*********99999998888999******************** PP

            GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdslea 273
                     v+        + + ++++p+E+ +V+ +++l++l     s+++er+e Lk+++sl+Pk vv++e + +  +s +F++ f+++l+y ++++ds++ 
  XP_009146421.1 332 VI-------DKSQLIDTSPHETFIVCAQFRLYQLK---NSITDERSEALKALRSLNPKGVVLCEYNGEGsSSVDFAADFSRKLDYLWKFLDSTSY 416
                     96.......445678*******************8...77777789********************9997889********************99 PP

            GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpL 367
                     ++    +e+++ Er l++ e+++v++ +g+     +e +e W er+++aGF++ +++e+a + ak+llrk++ +++ ++e+e+  + l Wk++++
  XP_009146421.1 417 GF----KEENSEERNLMEGEATKVLMSSGDT----NEGKEIWYERMRKAGFSAEAFGEDAIDGAKSLLRKYDnNWEIKMEDEDTFAGLLWKGEEV 503
                     97....8888889999999***********9....9************************************777777777777777******** PP

            GRAS 368 vsvSaWr 374
                      ++S W+
  XP_009146421.1 504 SFCSLWK 510
                     ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.496122489IPR005202Transcription factor GRAS
PfamPF035142.3E-75149510IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MSLEETEPPS QTLDNVLGWF DDSISLTPLP GFTDSDLLNE FDWSQTLEWD HQTQAQDPGC  60
DFLHSYSQDL DAYIGCEATD LEVVTGVPVI DSDPPPVVVQ LPNDQSKKRN RDELTDAQLV  120
KRSARSKKKA DKSTEVSRKD SNKAERWAEQ LLNPCALAIT ARNSSRVQHY ICVLSELASS  180
CGDSNHRLAS FGLCALKKHI STSFVPSSTL TFASAEVKMF QKTLLKFYEV SPWFALPNNM  240
ANSAILQILS QEPRDKTDLH ILDIGVSHGM QWPTLLEALC CRPEGPPLQV RITVVSDLTA  300
DIPFSVGPPS YNYASQLIGF ARSLNINLQI SVIDKSQLID TSPHETFIVC AQFRLYQLKN  360
SITDERSEAL KALRSLNPKG VVLCEYNGEG SSSVDFAADF SRKLDYLWKF LDSTSYGFKE  420
ENSEERNLME GEATKVLMSS GDTNEGKEIW YERMRKAGFS AEAFGEDAID GAKSLLRKYD  480
NNWEIKMEDE DTFAGLLWKG EEVSFCSLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B7e-3014051079473Protein SHORT-ROOT
5b3h_B5e-3014051025419Protein SHORT-ROOT
5b3h_E5e-3014051025419Protein SHORT-ROOT
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146421.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2425390.0JX242539.1 Brassica rapa isolate BrNSP1_chiifu nodulation signaling pathway 1-like protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146421.20.0PREDICTED: scarecrow-like protein 29
SwissprotQ9LRW30.0SCL29_ARATH; Scarecrow-like protein 29
TrEMBLJ7HA550.0J7HA55_BRACM; Nodulation signaling pathway 1-like protein
TrEMBLM4EF160.0M4EF16_BRARP; Uncharacterized protein
STRINGBra027378.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107472834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.10.0GRAS family protein