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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009146390.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
ERF |
| Protein Properties |
Length: 379aa MW: 41822 Da PI: 4.6372 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009146390.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 62.8 | 7.6e-20 | 126 | 176 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
+y+G+r+++ +g+W+AeIrdp++ r +lg+f+taeeAa+a++aa+++++g+
XP_009146390.1 126 QYRGIRQRP-WGKWAAEIRDPRK---GSREWLGTFDTAEEAARAYDAAARRIRGN 176
69*******.**********954...39************************985 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0001666 | Biological Process | response to hypoxia |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 379 aa
Download sequence Send
to blast |
MCGGAIISEF IPPSRSRRVT SEHLWPDLKN KGKASKKKRS GFIDLDDEFE ADFQGFKDDA 60
SFDCEDEFDV DDDVFADVKP FVFAAGAKPV ASPPAAFAST GSVSGKKTIE SGGQAEKSAK 120
RKRKNQYRGI RQRPWGKWAA EIRDPRKGSR EWLGTFDTAE EAARAYDAAA RRIRGNKAKV 180
NFPEEMVPSV SQKRPSAKKA VAKPNQSPAS VQQPTHVSQY CNNSFDNMGH DSSFGDVSFM 240
EEKPQMYNNQ FFDVGGNNGY QYFSSDQGSN SLDCSEFGWS DQTPKTPEIS SMLVNNNQAP 300
FIEETNPAKK LKTSSEDGTS NNDSSDDLMA YLNNALWESP LEVEAMFGGD AATMTQEEGN 360
PMDLWSLDDI NSMLDGGVF
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Constitutive in flowers, leaves, stems, and roots. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:9192694}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in carotenoid biosynthesis regulation. Binds to the 5'-ATCTA-3' element present in the promoter of phytoene synthase (PSY) and phytoene desaturase (PDS). Involved in ethylene response and resistance to necrotrophic pathogens. Acts as a downstream regulator in the ethylene signaling pathway. Partially redundant with RAP2-12. {ECO:0000269|PubMed:17873090, ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by darkness, ethylene and Botrytis cinerea. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}. |
| Publications
? help Back to Top |
- Haas BJ, et al.
Full-length messenger RNA sequences greatly improve genome annotation.
Genome Biol., 2002. 3(6): p. RESEARCH0029
[PMID:12093376] - Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F
Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana.
Plant Sci., 2015. 236: p. 37-43
[PMID:26025519] - Gasch P, et al.
Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
Plant Cell, 2016. 28(1): p. 160-80
[PMID:26668304] - Yao Y, et al.
ETHYLENE RESPONSE FACTOR 74 (ERF74) plays an essential role in controlling a respiratory burst oxidase homolog D (RbohD)-dependent mechanism in response to different stresses in Arabidopsis.
New Phytol., 2017. 213(4): p. 1667-1681
[PMID:28164334] - Giuntoli B, et al.
Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana.
Plant Cell Environ., 2017. 40(10): p. 2333-2346
[PMID:28741696]
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