PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146237.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 351aa    MW: 38609.5 Da    PI: 7.6293
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146237.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.21.5e-53181451128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLk+k+++ +l++  +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++
  XP_009146237.1  18 LPPGFRFHPTDEELVVHYLKRKAASAPLPV-AIIAEVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLAS 111
                     79****************************.88***************999999***************************************99 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kk Lvfy+g+ pkg k+dW+mheyrl
  XP_009146237.1 112 dGNQKVGVKKALVFYSGKPPKGIKSDWIMHEYRL 145
                     67788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-6514179IPR003441NAC domain
PROSITE profilePS5100562.10518179IPR003441NAC domain
PfamPF023658.8E-2819145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MESTDSSGGP PPPPQPNLPP GFRFHPTDEE LVVHYLKRKA ASAPLPVAII AEVDLYKFDP  60
WELPAKASFG EQEWYFFSPR DRKYPNGARP NRAATSGYWK ATGTDKPVLA SDGNQKVGVK  120
KALVFYSGKP PKGIKSDWIM HEYRLIDNKP NNRPPGCDFG NKKNSLRLDD WVLCRIYKKN  180
NAGRHVDNDK DHDMIDYIFR KIPPSLSMTA ATTGLHHNVS RSMNFFPGGY GIFPDGDPGL  240
YNGSGMINNN IAVCTNGDVV GNGLNHASSS GPMMMANLKR ALPVPFWPVA EEEQDVSPNK  300
RFHGGEGGGD CSNMSSSMME ETPPLMQQQG GVLGDGLTTS YQLTGLNWYS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-741218411170NO APICAL MERISTEM PROTEIN
1ut4_B6e-741218411170NO APICAL MERISTEM PROTEIN
1ut7_A6e-741218411170NO APICAL MERISTEM PROTEIN
1ut7_B6e-741218411170NO APICAL MERISTEM PROTEIN
3swm_A7e-741218414173NAC domain-containing protein 19
3swm_B7e-741218414173NAC domain-containing protein 19
3swm_C7e-741218414173NAC domain-containing protein 19
3swm_D7e-741218414173NAC domain-containing protein 19
3swp_A7e-741218414173NAC domain-containing protein 19
3swp_B7e-741218414173NAC domain-containing protein 19
3swp_C7e-741218414173NAC domain-containing protein 19
3swp_D7e-741218414173NAC domain-containing protein 19
4dul_A6e-741218411170NAC domain-containing protein 19
4dul_B6e-741218411170NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269|PubMed:16055634}.
UniprotTISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269|PubMed:15100403, ECO:0000269|PubMed:16055634, ECO:0000269|PubMed:18849494}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146237.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747620.0KF974762.1 Brassica napus NAC transcription factor 56-2 (NAC56-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001303143.10.0NAC transcription factor 56
RefseqXP_009146237.10.0PREDICTED: NAC transcription factor 56
SwissprotQ9LD440.0NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A0C4MXB50.0A0A0C4MXB5_BRANA; NAC56-2.1 protein
TrEMBLA0A3P5Z0D80.0A0A3P5Z0D8_BRACM; Uncharacterized protein
TrEMBLM4EEM50.0M4EEM5_BRARP; Uncharacterized protein
STRINGBra027237.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.10.0NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]