PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 368aa MW: 42119.3 Da PI: 9.2871

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009146116.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	69.9	2.3e-22	25	71	5	51
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +s + ++++kR+ +++KKA ELS+LC++ev+vi+++s+g+l+++++ XP_009146116.1 25 TSSLKATSLAKRQVTVFKKARELSILCGIEVCVIYYGSDGELKTWPK 71 578899***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.5E-6	13	72	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.03E-17	26	104	IPR002100	Transcription factor, MADS-box
CDD	cd00266	6.60E-17	29	93	No hit	No description
PROSITE profile	PS50066	11.886	29	73	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.0E-13	30	69	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MSSSSLACLP SSSSSQIRQN HFQKTSSLKA TSLAKRQVTV FKKARELSIL CGIEVCVIYY 60 GSDGELKTWP KDREKVKDMA RRYSQLSDMK RRKGQDDLDK FLKKINKEDS KKKKKMKKVK 120 VESSCKYPDW DPRFDNCSVE QLTELIQSLE HSETKLQHRL RGAVESQRQR NMYYTTMTGQ 180 EQMNHLQQHS NQVSMDQYNH GPGTLPQLPV STSAFNQSQS LAPLPNSLTI HQNPNMESYS 240 RLLGVQETGM NELLSMNMLP YNNINTNNVN VFPNQFHQNS YNMEDYSGFL GVQETGINNM 300 SSEDYSGLLW TQGTGINGLQ NMDMFGYNNN SNNNAYGFSH HQPVQYPGQR APLGFQYMDR 360 STQNIRPL

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MSSSSLACLP SSSSSQIRQN HFQKTSSLKA TSLAKRQVTV FKKARELSIL CGIEVCVIYY  60
GSDGELKTWP KDREKVKDMA RRYSQLSDMK RRKGQDDLDK FLKKINKEDS KKKKKMKKVK  120
VESSCKYPDW DPRFDNCSVE QLTELIQSLE HSETKLQHRL RGAVESQRQR NMYYTTMTGQ  180
EQMNHLQQHS NQVSMDQYNH GPGTLPQLPV STSAFNQSQS LAPLPNSLTI HQNPNMESYS  240
RLLGVQETGM NELLSMNMLP YNNINTNNVN VFPNQFHQNS YNMEDYSGFL GVQETGINNM  300
SSEDYSGLLW TQGTGINGLQ NMDMFGYNNN SNNNAYGFSH HQPVQYPGQR APLGFQYMDR  360
STQNIRPL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	116	RRKGQDDLDKFLKKINKEDSKKKKKMK
2	101	117	LKKINKEDSKKKKKMKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009146116.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009146116.1	0.0	PREDICTED: agamous-like MADS-box protein AGL103
Swissprot	Q9LSB2	1e-110	AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBL	M4E0P4	0.0	M4E0P4_BRARP; Uncharacterized protein
STRING	Bra022341.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	6e-99	AGAMOUS-like 103

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]