PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009145781.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 267aa MW: 28460.5 Da PI: 5.1301

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009145781.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.3e-05	153	193	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_009145781.1 153 KVRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 193 678889999*******999.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.877	143	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-11	145	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.35E-4	151	197	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.8E-7	151	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MGDTAEDQDD QTMVEAVGVP SFSELLMLSD GFLSSSEDHH REVNGGDGGE DSFGFVFSGT 60 NGSKMLCFSG DCQNGDESLF QEPSLPSGVS VSDPSSCTIN TCKNSNDTCT NEKSTKSSNK 120 RTGSGNGQNM DHNQKPSKKC KKNQDKSSVG IAKVRKERLG ERIAALQQLV SPYGKTDAAS 180 VLHEAMGYIK FLQDQIQVLC SPYLINYSLD GGAVTGDVMP GKKVRDLRSR GLCLVPVSST 240 VHVENSNGAD LWSPATASMG HTMSPSQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009145781.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009145781.1	0.0	PREDICTED: transcription factor bHLH113 isoform X2
Swissprot	Q9LT67	1e-146	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A078I5R4	0.0	A0A078I5R4_BRANA; BnaA05g20570D protein
TrEMBL	A0A397ZLA2	0.0	A0A397ZLA2_BRACM; Uncharacterized protein
TrEMBL	M4E0Y1	0.0	M4E0Y1_BRARP; Uncharacterized protein
STRING	Bra022428.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-148	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]