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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009145780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 268aa MW: 28588.7 Da PI: 5.3478 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.5 | 6.3e-05 | 154 | 194 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_009145780.1 154 KVRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 194 678889999*********999.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.877 | 144 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-11 | 146 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.36E-4 | 152 | 198 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.8E-7 | 152 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MGDTAEDQDD QTMVEAVGVP SFSELLMLSD GFLSSSEDHH REVNGGDGGE DSFGFVFSGT 60 NGSKMLCFSG DCQNGDESLF QEPSLPSGVS VSDPSSCTIN TCKNSNDTCT NEKSTKSSNK 120 KRTGSGNGQN MDHNQKPSKK CKKNQDKSSV GIAKVRKERL GERIAALQQL VSPYGKTDAA 180 SVLHEAMGYI KFLQDQIQVL CSPYLINYSL DGGAVTGDVM PGKKVRDLRS RGLCLVPVSS 240 TVHVENSNGA DLWSPATASM GHTMSPSQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009145780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009145780.1 | 0.0 | PREDICTED: transcription factor bHLH113 isoform X1 | ||||
Swissprot | Q9LT67 | 1e-148 | BH113_ARATH; Transcription factor bHLH113 | ||||
TrEMBL | A0A078I5R4 | 0.0 | A0A078I5R4_BRANA; BnaA05g20570D protein | ||||
TrEMBL | A0A397ZLA2 | 0.0 | A0A397ZLA2_BRACM; Uncharacterized protein | ||||
TrEMBL | M4E0Y1 | 0.0 | M4E0Y1_BRARP; Uncharacterized protein | ||||
STRING | Bra022428.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7402 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 1e-137 | bHLH family protein |
Publications ? help Back to Top | |||
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