PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145767.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 207aa    MW: 23095 Da    PI: 9.1241
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145767.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.8e-19135169135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  XP_009145767.1 135 CSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRL 169
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.464129165IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-13129191No hitNo description
SMARTSM004012.7E-13129183IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.7E-14133167IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440135160IPR000679Zinc finger, GATA-type
PfamPF003201.2E-16135169IPR000679Zinc finger, GATA-type
CDDcd002026.29E-14135191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEYVEAFLSD FSVDDLLDLS STDAFVREKS SSSPREEERE KANSSSDQIT LLSPLEDILS  60
LPGSDSKLNV PVNPVETVEV QRQCIPVKPR SKRRRTNGHL WSLESPYSFG KKKRGRPKAE  120
TSSGDGIQQQ TRRCCSHCGV QKTPQWRMGP LGAKTLCNAC GVRFKSGRLL PEYRPACSPT  180
FSTEIHSNSH RKVLELRLTK TADQGQG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192113RRRTNGHLWSLESPYSFGKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145767.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893730.0AC189373.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB048F07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145767.11e-152PREDICTED: GATA transcription factor 7 isoform X2
SwissprotO655151e-94GATA7_ARATH; GATA transcription factor 7
TrEMBLA0A398AKN41e-150A0A398AKN4_BRACM; Uncharacterized protein
STRINGBra011673.1-P1e-145(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.19e-72GATA transcription factor 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]