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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009145268.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CPP | ||||||||
Protein Properties | Length: 673aa MW: 74079.6 Da PI: 7.0563 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 51.3 | 2.3e-16 | 383 | 421 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+N+ XP_009145268.1 383 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCVDCFNRP 421 689**********************************75 PP | |||||||
2 | TCR | 52.8 | 7.9e-17 | 468 | 507 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeCf++g+ Cs +C+Ce+CkN XP_009145268.1 468 RHKRGCNCKKSNCLKKYCECFQSGVGCSINCRCEGCKNAF 507 589***********************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 5.4E-19 | 382 | 423 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.515 | 383 | 508 | IPR005172 | CRC domain |
Pfam | PF03638 | 5.6E-12 | 385 | 420 | IPR005172 | CRC domain |
SMART | SM01114 | 5.7E-17 | 468 | 509 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.4E-12 | 470 | 506 | IPR005172 | CRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MDNSQKKKIE TPTPKSKFED SPVFNYINNL SPIEAVRSIP TVQTFNSLSF TSPPPVFTSP 60 HASFHRESRF FRCHNSVERS KALESLDRSV STQEVVVASG EVDLNKEATL EDQEEETSCD 120 RVDSPGTGDI VTQVLLDPSG GAPQGEDDGS SSQDVSVGLR KILDAQKENG TPRLMADAAE 180 LLVFRSPNDS EAFGCLVDKI SSSERRFCAG VKLTKHRDIT KDVPANDNQP LAVVPNQLVS 240 NLHRGSMRRR CLDFEVLGKR KKDIADDDQQ TVGDNKAESS SKCVVPGIGL HLNAIAMASR 300 GIKINTIHED STSVEIQKSF LGSTTPVQSQ DIMRETLDQA ESEPGKGLAV EEETLKPLVF 360 EELNQDSLQK KKRKVEEPGE GDSCKRCNCK KSKCLKLYCE CFAAGVYCIE PCSCVDCFNR 420 PIHEDTVLAT RKQIESRNPL AFAPKVIRNS DSIMETSDDA SKTPASARHK RGCNCKKSNC 480 LKKYCECFQS GVGCSINCRC EGCKNAFGKK DAYLLAIMES KQEEDLSKIQ QNSDLSKEVE 540 QNHPSSDQPS TPLPPYRHMV VHQPFLSKNR LPPTQFFLGA GSSSFRKPDG DLAQARIEKK 600 PLETVTEDKT EIMPEILSNT PITTVKAISP NSKRVSPPHI GSSESGSILG KRTNGRKLIL 660 RSIPAFPSLN PNQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-16 | 385 | 505 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 2e-16 | 385 | 505 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 247 | 261 | RRRCLDFEVLGKRKK |
2 | 369 | 374 | KKKRKV |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at the first stage of pollen development in uninucleate microspores and bicellular pollen but not in tricellular and mature pollen. {ECO:0000269|PubMed:18057042}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers with highest levels in developing ovules and microspores. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00370 | DAP | Transfer from AT3G22780 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009145268.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009145268.1 | 0.0 | PREDICTED: CRC domain-containing protein TSO1 | ||||
Swissprot | Q9LUI3 | 0.0 | TSO1_ARATH; CRC domain-containing protein TSO1 | ||||
TrEMBL | A0A397ZBQ0 | 0.0 | A0A397ZBQ0_BRACM; Uncharacterized protein | ||||
STRING | Bra033919.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1467 | 28 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 0.0 | Tesmin/TSO1-like CXC domain-containing protein |
Publications ? help Back to Top | |||
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