PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145259.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 407aa    MW: 46791.9 Da    PI: 4.6324
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145259.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35611532103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+++ed+++++++sws+ +nsf+v+d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  XP_009145259.1  61 FLTKTYDLVEDSRTNHVVSWSQAKNSFIVWDPQAFSTTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDR---------WEFANEGFLRGQKHLLKT 146
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  XP_009145259.1 147 IRRRKTS 153
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.89E-3556150IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.0E-3857150IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.4E-5957150IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-3161150IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-186184IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-1899111IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340100124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-18112124IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDPSYRFIKE EFPTGFIVSP SPPSSSTYSY LYSTSMVPND PTTSSSPQPI EGLHESGPPP  60
FLTKTYDLVE DSRTNHVVSW SQAKNSFIVW DPQAFSTTLL PRFFKHNNFS SFVRQLNTYG  120
FRKVNPDRWE FANEGFLRGQ KHLLKTIRRR KTSSNNQIQP PQSSSQEHSL DNCCIEVGRY  180
GLDGEMDSLK RDKQVLVMEL VKLRQQQQST KVYLKLIEEK LKKTESKQQQ MMSFLARAMQ  240
NPDFLQQLME QKEKRKEMEE AISKKRQRPI DQGTRNVVTV EDYDDDDDDG GARGGYGRYG  300
NDAGSSSAYM KQEMYGDLSG FEMSELDSLA MHIQGLGDQF TREEVLDVQK RDEEEEQEGY  360
PKVNNEIYGE GFWEDMLNEG QNFDFEGVEE NVDVLIEQLG YLGSSSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-245615312123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145259.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145259.10.0PREDICTED: heat stress transcription factor A-6b-like
RefseqXP_013752566.10.0heat stress transcription factor A-6b-like
SwissprotQ9LUH80.0HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLM4EYM10.0M4EYM1_BRARP; Uncharacterized protein
STRINGBra033913.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-180heat shock transcription factor A6B