PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009144988.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 505aa    MW: 57208.2 Da    PI: 6.4101
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009144988.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like71.71.1e-22251308155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                     k+r++Wt++L e+F++av+ LGG+ kA Pk +l++   m++kgLt+ hv SHLQkYRl
  XP_009144988.1 251 KTRVVWTNDLQEKFLKAVDILGGARKANPKPLLKMledMNIKGLTRRHVCSHLQKYRL 308
                     68****************************877665559******************8 PP
2Response_reg58.73.3e-20361411106
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+v+ + + ++ +++++ k gy +v++ +d+e+al+ l  +e+ ++l++ D  mp+++G+++lk i ++  +lp++++++ + ++ + +a   G
  XP_009144988.1  36 VLVVEPNFVTLRKMKNLMIKYGY-QVTVYADAEAALAFLrnCEHGINLVIWDFHMPRINGIQALKIICTKM-DLPVVIMSDDDRKTSVMQATVHG 128
                     899********************.***************555555**********************8865.8********************** PP

                     ESEEEESS--HHH CS
    Response_reg  94 akdflsKpfdpee 106
                     a  +++Kp+ +e 
  XP_009144988.1 129 ACYYVMKPIRKEI 141
                     ********87654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.56E-2633158IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.4E-2634157No hitNo description
SMARTSM004481.6E-1734145IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011033.01235150IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.6E-1736142IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.53E-1837145No hitNo description
Gene3DG3DSA:1.10.10.602.9E-21249310IPR009057Homeodomain-like
SuperFamilySSF466892.51E-12250311IPR009057Homeodomain-like
TIGRFAMsTIGR015577.6E-19251308IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MSEASRTDDG DRTLFKQRET SQISSFLNEF PASANVLVVE PNFVTLRKMK NLMIKYGYQV  60
TVYADAEAAL AFLRNCEHGI NLVIWDFHMP RINGIQALKI ICTKMDLPVV IMSDDDRKTS  120
VMQATVHGAC YYVMKPIRKE IIATIWQHIV RKRMMSKSGL IPPVQLDAVQ NHDGFKENKD  180
DSMPVDQGNS EQNINMIGEK AEKKPQIGEN LPIQSDSVQN NGSDQDNNDS WTKSPYNSEQ  240
NMDGEERKQP KTRVVWTNDL QEKFLKAVDI LGGARKANPK PLLKMLEDMN IKGLTRRHVC  300
SHLQKYRLSL EGKEITQQMQ EFGWSSACTT SPLLGLNNVH TATSSLINGG ASYPVQENQY  360
QNGYMEVNNN HAASSTLMNG RATYPVQDNQ YQNGYLGVNN NQVMTNTMPY DFDHDHYLQK  420
QKPEKASSID IPEDLGLAYT MPRLPYNLGH GNHLQHEQQH QLSHQWNNVM SNNEPELPSS  480
NGVTGVGGTY PSLPYDPNEF YNYNQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009144988.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144989.10.0PREDICTED: putative two-component response regulator ARR19
TrEMBLA0A078GXM10.0A0A078GXM1_BRANA; BnaA05g16250D protein
TrEMBLA0A397ZGZ90.0A0A397ZGZ9_BRACM; Uncharacterized protein
TrEMBLM4ETZ30.0M4ETZ3_BRARP; Uncharacterized protein
STRINGBra032275.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.15e-62response regulator 19