 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009144967.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
RAV |
| Protein Properties |
Length: 354aa MW: 40555.9 Da PI: 8.5652 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009144967.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 35.5 | 2.4e-11 | 49 | 96 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
++ykGV + +g W A+I+ +kr++lg+f +a eAa+a++ a kl+
XP_009144967.1 49 TKYKGVVQQQ-NGHWGAQIYAD-----HKRIWLGTFKSAAEAAAAYDSASIKLR 96
69****9888.8******9993.....4*********************99997 PP
|
| 2 | B3 | 92.6 | 2.9e-29 | 181 | 281 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
f k+ltpsdv+k++rlv+pkk+a +h g e+++++++d+ r+W+++++y+k+s+++v+t+GW++Fvk+++Lke+D++vF+
XP_009144967.1 181 FHKELTPSDVGKLNRLVIPKKHAVKHlpfiserdegetG-GAVEDVEVVFYDRAMRQWKFRYCYWKSSQSFVFTRGWNGFVKEKNLKEKDVIVFY 274
89****************************999887752.334999************************************************* PP
E-SS.SE CS
B3 84 ldgr.se 89
+ s+
XP_009144967.1 275 TCDVpSN 281
6554444 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MENLLLFLFP RVSHKETSHE ANTTTDTSVS SDLRLAKRMK PTVSPTATTK YKGVVQQQNG 60
HWGAQIYADH KRIWLGTFKS AAEAAAAYDS ASIKLRSFDA NSHRNFPWSE ITIHEPDFQK 120
SHTTEAVLNM IRESSYQQKF SDYLIVRSQM VAIANINIVG SKQRRGGGEE STKCFSCTEL 180
FHKELTPSDV GKLNRLVIPK KHAVKHLPFI SERDEGETGG AVEDVEVVFY DRAMRQWKFR 240
YCYWKSSQSF VFTRGWNGFV KEKNLKEKDV IVFYTCDVPS NFKTLEGQSN KFLMIDVDYF 300
TDKGSVEPKE VNEMVHNVSE REMKTENFFG TKVEEETKSE VSKGGFMLFG VRIQ
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
