 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009144942.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
RAV |
| Protein Properties |
Length: 325aa MW: 37460.8 Da PI: 9.6625 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009144942.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 35.5 | 2.6e-11 | 48 | 96 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
s+ykGV ++++g W A+I+ +kr++lg+f + eAa a++ a kl+
XP_009144942.1 48 SKYKGVVEHHRNGHWGAQIYID-----HKRIWLGTFKSSVEAAMAYDSASIKLR 96
89****99999*******9993.....4*********************99997 PP
|
| 2 | B3 | 89.3 | 3e-28 | 179 | 274 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE...E CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk...l 84
f k ltpsdv+k++rlv+pk++a ++ +g+ e++++++ d++ r+W+++++y+ +s+++v+t+GWk+Fvk+++Lke+D++vF+ l
XP_009144942.1 179 FRKGLTPSDVGKLNRLVIPKRHAVKYlpfinereEGEIVEDVEVVFFDKTMRQWKFRYCYWTSSQSFVFTSGWKRFVKEKNLKERDVIVFYrcdL 273
7899*************************998885566699**************************************************4443 PP
- CS
B3 85 d 85
+
XP_009144942.1 274 V 274
4 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 325 aa
Download sequence Send
to blast |
MGICNQMTET STSSNPLLPL KKRKRPVDDT TDNVLAVATK KVALLGNSKY KGVVEHHRNG 60
HWGAQIYIDH KRIWLGTFKS SVEAAMAYDS ASIKLRSFDA TCHRNFPLNT STVHEPNFQK 120
GYTTEAVLEM IKDGSYQQKF KDYLSLPFHN VASINLVGSE RVQGDQDSTK YRLTCTELFR 180
KGLTPSDVGK LNRLVIPKRH AVKYLPFINE REEGEIVEDV EVVFFDKTMR QWKFRYCYWT 240
SSQSFVFTSG WKRFVKEKNL KERDVIVFYR CDLVGQSKNF LMIHVQYSSE GEVKTENFVN 300
SKLKEEETKS VDNKGGFMLF GVKIQ
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
