PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009144762.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 396aa    MW: 43042.6 Da    PI: 5.7435
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009144762.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.4e-31203261259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs+fpr+YYrC+s+ gC+++k+vers+ dp++++itY++eHnh+
  XP_009144762.1 203 SDLWAWRKYGQKPIKGSPFPRGYYRCSSSkGCSARKQVERSRADPSMLVITYTSEHNHP 261
                     699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-31196263IPR003657WRKY domain
PROSITE profilePS5081132.558197263IPR003657WRKY domain
SuperFamilySSF1182904.05E-26200263IPR003657WRKY domain
SMARTSM007743.4E-38202262IPR003657WRKY domain
PfamPF031066.8E-26204261IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDNFQGDLTD VVRGIGGHML SPEISSSPNI LPLPQPSPSD LHMNPFGDPF VSMTDPLLQE  60
LNAVTNSSHF STAEDNANNN NRFLVPKVVL EDDQIKSQCS IFPRIRISHS NIIHESSPCN  120
SPAMSAHVLA AAAAASPRGI INANTNSPRN CLLVDGNTFS SQIQISSPRN VGLKRRKSQA  180
KKVVCIPAPA AMNSRSSGEV VPSDLWAWRK YGQKPIKGSP FPRGYYRCSS SKGCSARKQV  240
ERSRADPSML VITYTSEHNH PWPIQRNALA GSTRSCSSNP NSSKSSTTTA SHNGPQSNTH  300
LPSSASAVKN EQTEEDMELE TVEDDNKVAP YRPEIHDQHQ PDDFFADLEE LELEGDSLSM  360
LLSQGCAGDL NNETIASDGI SDFFGWTAGN NNKDDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-24177263279Disease resistance protein RRS1
5w3x_D2e-24177263279Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009144762.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896280.0AC189628.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS003D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144762.10.0PREDICTED: probable WRKY transcription factor 14
SwissprotQ9SA800.0WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLM4EBR90.0M4EBR9_BRARP; Uncharacterized protein
STRINGBra026228.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.10.0WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]