PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009144688.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 284aa MW: 31848.7 Da PI: 5.486

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009144688.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.8	1e-09	133	180	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR++i ++ L++l+P + ++ Ka +L + ++Y+ sLq XP_009144688.1 133 SHSIAERARREKISARMKLLQDLVPGC----NRITGKAVMLDEIINYVESLQ 180 8************************....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.06E-16	127	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.34E-9	127	184	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-16	129	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.932	129	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.6E-7	133	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-9	135	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MDKETEETLN YLLPFGDGND PMMISDFVGR FCDTQEFPVG FPYLGHFGHS QVQESNKSSL 60 LDPGSVSGTG KTRPNSRKRK ESPASNSKEE NNAAVAGKQN ETEKGENKDK EKLSEPYKDY 120 IHVRARRGQA TDSHSIAERA RREKISARMK LLQDLVPGCN RITGKAVMLD EIINYVESLQ 180 RQVQFLSMKL ATINPRTEFN AANAMLSAEM LQLGESLSCS ESRFPSEYLA VGKNILSEGF 240 VQAEAPAFWE NDLQSIVHMG FRDCQQQSIN CSEPTVQMKI EPER

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009144688.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009144688.1	0.0	PREDICTED: transcription factor bHLH77-like isoform X2
Swissprot	Q9LK48	1e-108	BH077_ARATH; Transcription factor bHLH77
TrEMBL	M4F7J8	0.0	M4F7J8_BRARP; Uncharacterized protein
STRING	Bra037059.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	1e-111	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]