PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009144630.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 290aa    MW: 30890.1 Da    PI: 6.8048
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009144630.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.9e-09135179554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+ +      K + a++  + v+Y+k L
  XP_009144630.1 135 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 179
                     99***********************55......9**************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-14129189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-13133187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-6135179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-10136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
TPSDDFFDQI LGLPNFPASS ATGLFGGLGG GGGAPPMMLQ VGSGEEGSGF HSQMFPLGLS  60
LEQGKGPGVL RPEGGGGLGS GKQFSDDVLD HPSSSMKPVF PGQPMQQPAP SAPPHQPTSI  120
RPRVRARHGQ ATDPHSIAER LRRERIAERI RALQELVPTV NKTDRAAMID EIVDYVKFLR  180
LQVKVWSMSR LGGAGAVAPL VTDMPLPSSV EDEGSEGGRT PQAAWEKGSN DGTERQVAKL  240
MEKNVWAAMQ LLQSKTLCMM PISLAMAIYH SQPPDTSSSV VKPETNPPRP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.181911e-130flower| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009144630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527650.0AK352765.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-G01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144630.10.0PREDICTED: transcription factor UNE12-like, partial
SwissprotO227681e-153UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A3P6A7S00.0A0A3P6A7S0_BRACM; Uncharacterized protein
TrEMBLM4DPU80.0M4DPU8_BRARP; Uncharacterized protein
STRINGBra018539.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-122bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]