PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009144471.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 348aa    MW: 38470.9 Da    PI: 6.0616
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009144471.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.1e-10195243355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  XP_009144471.1 195 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 243
                     58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.50E-11190247No hitNo description
SuperFamilySSF474594.84E-17190259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-16193260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-7195243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10198248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGGENNEGEM GFKHVDDESG ISRVGVTSTD HFFSSVDWDP VVSGGGFSSS HYTSMVMDNP  60
GMSCFPHYQT GSGYPDMPPS LLPFGDCVGG GPVLGSDKKG ESVGRLIRAG ESHQVSDDVV  120
LGASPSRKRR QLEAESSQRN KKAVEEFLEE PQRGSDQSQK KHKNDQSKEK ESSQSEEAPE  180
KNYIHMRARR GQATNSHSLA ERVRREKISE RMRLLQELVP GCNKITGKAV MLDEIINYVQ  240
SLQQQVEFLS MKLATVNPEL NIDIDRILAK DIMQSRDVRT TPTLGLNPFS GFQGTIPNVP  300
TTTNSQYNPL HQTTLESELQ SLYQMGFVSN PSTMSSFSPN NGRLKPEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130SRKRRQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009144471.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895190.0AC189519.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091G04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144471.10.0PREDICTED: transcription factor bHLH74-like isoform X1
RefseqXP_009144472.10.0PREDICTED: transcription factor bHLH74-like isoform X1
RefseqXP_018514491.10.0PREDICTED: transcription factor bHLH74-like isoform X1
SwissprotQ6NKN90.0BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A397YFA40.0A0A397YFA4_BRACM; Uncharacterized protein
STRINGBra018461.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]