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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009144469.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-X1 | ||||||||
Protein Properties | Length: 1114aa MW: 121154 Da PI: 8.0851 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 23.9 | 8.8e-08 | 317 | 335 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C+++CH GpC+pC+ XP_009144469.1 317 CGRHRCERTCHVGPCDPCQ 335 ******************6 PP | |||||||
2 | zf-NF-X1 | 18.1 | 6e-06 | 381 | 398 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C++ CH+GpC+ C XP_009144469.1 381 CGNHFCSEVCHPGPCGDC 398 ****************99 PP | |||||||
3 | zf-NF-X1 | 25.6 | 2.6e-08 | 440 | 457 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C++ CH G+CppC XP_009144469.1 440 CGLHTCNEVCHSGDCPPC 457 ****************** PP | |||||||
4 | zf-NF-X1 | 16.3 | 2.1e-05 | 538 | 556 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++ CH G CppC XP_009144469.1 538 CGQHSCESSCHSGHCPPCL 556 ******************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 9.53E-6 | 140 | 210 | No hit | No description |
PROSITE profile | PS50016 | 8.911 | 148 | 209 | IPR019787 | Zinc finger, PHD-finger |
PROSITE profile | PS50089 | 9.465 | 151 | 207 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS01359 | 0 | 151 | 206 | IPR019786 | Zinc finger, PHD-type, conserved site |
CDD | cd06008 | 6.27E-6 | 240 | 300 | No hit | No description |
SMART | SM00438 | 0.025 | 262 | 280 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 3.3 | 264 | 279 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 8.37E-13 | 307 | 355 | No hit | No description |
SMART | SM00438 | 4.0E-5 | 317 | 336 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 3.4E-6 | 317 | 334 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.20E-9 | 371 | 416 | No hit | No description |
SMART | SM00438 | 2.6E-5 | 381 | 400 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 7.1E-5 | 381 | 398 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.40E-13 | 430 | 477 | No hit | No description |
SMART | SM00438 | 2.9E-6 | 440 | 459 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 5.2E-7 | 440 | 457 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 91 | 499 | 530 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 18 | 499 | 510 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.71E-9 | 528 | 580 | No hit | No description |
SMART | SM00438 | 0.0011 | 538 | 557 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 9.7E-4 | 538 | 555 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.66E-6 | 585 | 632 | No hit | No description |
SMART | SM00438 | 0.079 | 595 | 613 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 24 | 595 | 612 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.13 | 648 | 678 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.028 | 648 | 663 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.21E-4 | 676 | 725 | No hit | No description |
SMART | SM00438 | 0.14 | 687 | 708 | IPR000967 | Zinc finger, NF-X1-type |
Gene3D | G3DSA:3.30.70.330 | 3.8E-4 | 939 | 990 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1114 aa Download sequence Send to blast |
MSSQVRRDRP RSNPHQTWVP RGAANSVAAA VVNEPSLPPP ANTDRTSESL DAGAAASRPL 60 RQRNGSARPS YNNHQRSNNV VGPPPPSRQR RNNAPGILPD YRHRVASRTQ PVNQGKKVVK 120 EEENTTVLAD ANLPQLVQEL QDKLVKSSIE CMICYDMVGR SANIWSCSSC YSIFHMHCIK 180 KWARAPTSVD LLAEKNQGDN WRCPGCQSVQ LTSSREICYR CFCGKRKDPP SDPYLTPHSC 240 GEPCGKPLER EVSAEMDKDD LCPHSCVLQC HPGPCPPCKA FAPPRSCPCG KKMIHTRCSE 300 RRSVLVCGQR CEKLLDCGRH RCERTCHVGP CDPCQVPVNA TCFCKKKAET VICGEMNVKG 360 ELKADDGVYS CNSNCGKPLG CGNHFCSEVC HPGPCGDCDL LPSKVKTCYC GKTRLEEQIR 420 SSCLDPIPSC SNTCRKVLPC GLHTCNEVCH SGDCPPCLVK VNQKCRCGSS FRTVECYFTT 480 SSETEKFVCA KSCGRKKNCG RHRCSERCCP LLNAKKNDLS GDWDPHACQL PCGKNLRCGQ 540 HSCESSCHSG HCPPCLEMIF TDLTCACGRT SIPPPLPCGT PVPSCQLPCS IPQPCGHSAT 600 HGCHFGDCPP CSAPVEKKCV GGHVVLRNIP CGLKDIRCNK ICGKTRRCGL HACARTCHPE 660 PCDGYNESEA VSRVTCGQTC GAPRRDCRHV CAALCHPSLP CPDSRCEFPV TITCSCGRLT 720 ATVPCDAGGE SAGNLRVGSV NKTSVLNKLP TPLQPVESSD NRIPLGQRKL SCDDECAKQE 780 RKRVLQDAFD ITTPNLDSLH FSENSAMTEI ISDIYRRDPK WVLAVEERLK FLVLGKARGS 840 TSALKVHVFC PMQKDKLDMV RLLAERWKLA VSNGGWEPKK FIVVHVTQKS KPPTRIIGAR 900 GGAISVGGPH PPSFDPLVDM DPRLVVSLLD LPREANVSAV VLRFGGECEL VWLNDKNALA 960 VFHDPARAAT AMRRLDHGSV YNGAVVVQNA AQSQSLGNNA WGKLPSSSSW DVQKANPWKK 1020 AVIQESDDSW GADDSPIGGS STDTQASAWR SATSNAPIVT SANRWSVLEP EKPKTSALEP 1080 LVQSGESSSS EAAGKKLVEG SGEEVVDDWE KVCE |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009144469.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189519 | 0.0 | AC189519.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091G04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009144469.1 | 0.0 | PREDICTED: NF-X1-type zinc finger protein NFXL1-like | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | M4DPL7 | 0.0 | M4DPL7_BRARP; Uncharacterized protein | ||||
STRING | Bra018458.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5955 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |