PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 268aa MW: 29230.9 Da PI: 8.9464

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009144310.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.8	2.1e-39	52	151	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++ e++r da++slvyeA+ r+rdP+yG++g i++lq+++++l++el XP_009144310.1 52 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELT 146 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++++e XP_009144310.1 147 TVRTE 151 99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.189	51	152	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-40	52	149	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MSRDRERFSE YHEIVKKVKK DPTFEKTTDH AVMGIRRHVA VPPGTTLNTV TPCAACKLLR 60 RRCAEECPFS PYFSPHEPHK FAAVHKVFGA SNVSKMLLEV GESQRGDAAN SLVYEANLRL 120 RDPIYGCMGA ISALQHHIQS LQSELTTVRT EILRHKYREA ATITSLQNNN NNNFNNTTTS 180 VSDHAALAAS ILLPPPPPPP PPPRPPRLLS SQPAPPPTPP ASLPSPSMVV SSSSSNSSAT 240 NSIYNPPPSS TAGYSNSLSS DNNVHYFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-41	45	163	4	122	LOB family transfactor Ramosa2.1
5ly0_B	4e-41	45	163	4	122	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269\|PubMed:12068116}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009144310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009144310.1	0.0	PREDICTED: LOB domain-containing protein 13
Refseq	XP_013752426.1	0.0	LOB domain-containing protein 13
Swissprot	Q9AT61	1e-133	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A397Z9K1	0.0	A0A397Z9K1_BRACM; Uncharacterized protein
STRING	Bo4g059520.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1927	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	1e-128	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]