PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009144287.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 335aa    MW: 37886.9 Da    PI: 10.1303
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009144287.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.42e-30269327360
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp ++++tYe eH h+k
  XP_009144287.1 269 DDYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCLEDPAMLIVTYEAEHSHPK 327
                     99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.5E-16223265IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-32255327IPR003657WRKY domain
PROSITE profilePS5081129.792262328IPR003657WRKY domain
SuperFamilySSF1182903.01E-26265327IPR003657WRKY domain
SMARTSM007741.6E-36267327IPR003657WRKY domain
PfamPF031065.5E-26269326IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEEIEGANRA AVESSHRVLN LLCTPHQQDQ EYNNVSLLSE TREAVFMFKR ASSLLSTTSV  60
GHARFRRAKE PQTHLSQSIF LDPVHQRTEP PPSQKVLRSG FHELSTDSLT LGTRSFSLNS  120
DVKAKAPLLQ LNQSIHQNMF PEHQQLHERL EAHRHQMQQQ QQKRQGEIML RKCNGGISLS  180
FDNSSCTQTM SSTRSFVSSL SIDGSVANVE GNNSFHLVGV QSSQHSKRKC LIKCGSSSRC  240
HCSKKRKHRV RRSIRVPAIS NKVADIPPDD YSWRKYGQKP IKGSPYPRGY YKCSSMRGCP  300
ARKHVERCLE DPAMLIVTYE AEHSHPKLPS QAMTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20255330276WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226246KRKCLIKCGSSSRCHCSKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.70863e-67flower
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009144287.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9123940.0EU912394.1 Brassica napus WRKY21-1 transcription factor (WRKY21-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144287.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-163WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLM4DP630.0M4DP63_BRARP; Uncharacterized protein
STRINGBra018303.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-146WRKY DNA-binding protein 21