PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009144245.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 599aa MW: 66493 Da PI: 5.9944

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009144245.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00048	436	473	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ + K s + Le++++++ Lq XP_009144245.1 436 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 473 67799************55......5566667777777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.450.40	2.4E-4	5	115	IPR029016	GAF domain-like
Pfam	PF14215	5.3E-9	6	43	IPR025610	Transcription factor MYC/MYB N-terminal
Pfam	PF14215	6.8E-19	55	143	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	2.72E-4	417	474	No hit	No description
PROSITE profile	PS50888	11.28	423	472	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-4	435	490	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-5	436	480	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 599 aa Download sequence Send to blast
MGSTSQEILR SLCSNTEWKY AVFWKLNHPS RMVLTLEDAY YDKHGAHDPL GLALAKMAYH 60 VYSLGEGIVG HVAVSGEHQW VFPDYYDNWY SASEFHNVWE SQISAAIKTI LVVPVGPCGV 120 VQLGSLLKVD EDVTLVNHIK HMFLALKDPL PDHEANLMQC NMNNSFYLPK LPSECSHVEA 180 FPNCSGEVGK AMDVEESSFL TQYPNLHPYL KNHVLNNTSS STLAIDTERL ITDQSYPGLD 240 STFHTLSTDN EKSSRFDALI SSGYNFPGSE LLEALGSGFK QTSRGLEELV KSEHGSATRP 300 TDDNMSHSQL TFDSAPENLL DAVVANVCHS DGNARDDIFS SRSVQSLLTS MEMAEPSGQN 360 KHIVSNPNDR AMNQPLVEVD TQQNPSDICG AFSSIGFSST CPSSSSDHFQ TSLEMPKKNK 420 RRAKPGESSR PRPRDRQLIQ DRIKELRELV PNGSKCSIDS LLERTIKHML FLQNVTKHAD 480 KLSKSANAKM QQKETGGQGS TCAVEVGGHL QVCSIIVENL NKHGMVLIEM LCEECSHFLE 540 ISNVIRSLDL TILRGVTEAQ GDKTWICFVV ESQSNKVMQR MDILWSLVQI FQPKANGKP

Sequence ? help Back to Top

Protein Sequence Length: 599 aa Download sequence Send to blast

MGSTSQEILR SLCSNTEWKY AVFWKLNHPS RMVLTLEDAY YDKHGAHDPL GLALAKMAYH  60
VYSLGEGIVG HVAVSGEHQW VFPDYYDNWY SASEFHNVWE SQISAAIKTI LVVPVGPCGV  120
VQLGSLLKVD EDVTLVNHIK HMFLALKDPL PDHEANLMQC NMNNSFYLPK LPSECSHVEA  180
FPNCSGEVGK AMDVEESSFL TQYPNLHPYL KNHVLNNTSS STLAIDTERL ITDQSYPGLD  240
STFHTLSTDN EKSSRFDALI SSGYNFPGSE LLEALGSGFK QTSRGLEELV KSEHGSATRP  300
TDDNMSHSQL TFDSAPENLL DAVVANVCHS DGNARDDIFS SRSVQSLLTS MEMAEPSGQN  360
KHIVSNPNDR AMNQPLVEVD TQQNPSDICG AFSSIGFSST CPSSSSDHFQ TSLEMPKKNK  420
RRAKPGESSR PRPRDRQLIQ DRIKELRELV PNGSKCSIDS LLERTIKHML FLQNVTKHAD  480
KLSKSANAKM QQKETGGQGS TCAVEVGGHL QVCSIIVENL NKHGMVLIEM LCEECSHFLE  540
ISNVIRSLDL TILRGVTEAQ GDKTWICFVV ESQSNKVMQR MDILWSLVQI FQPKANGKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	415	421	PKKNKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate root development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009144245.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352985	0.0	AK352985.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-P09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009144245.1	0.0	PREDICTED: transcription factor bHLH155-like isoform X2
Swissprot	Q58G01	0.0	LHWL3_ARATH; Transcription factor bHLH155
TrEMBL	A0A397Z937	0.0	A0A397Z937_BRACM; Uncharacterized protein
TrEMBL	M4DP33	0.0	M4DP33_BRARP; Uncharacterized protein
STRING	Bra018273.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	0.0	conserved peptide upstream open reading frame 7

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424]