PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009144244.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 609aa MW: 67645.2 Da PI: 6.1096

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009144244.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00049	446	483	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ + K s + Le++++++ Lq XP_009144244.1 446 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 483 67799************55......5566667777777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.450.40	7.4E-4	5	125	IPR029016	GAF domain-like
Pfam	PF14215	4.7E-29	6	153	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	2.58E-4	427	484	No hit	No description
PROSITE profile	PS50888	11.28	433	482	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-4	445	500	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-5	446	490	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
MGSTSQEILR SLCSNTEWKY AVFWKLNHPS RMVLTLEDAY YDNHGHYNSP KNMHGAHDPL 60 GLALAKMAYH VYSLGEGIVG HVAVSGEHQW VFPDYYDNWY SASEFHNVWE SQISAAIKTI 120 LVVPVGPCGV VQLGSLLKVD EDVTLVNHIK HMFLALKDPL PDHEANLMQC NMNNSFYLPK 180 LPSECSHVEA FPNCSGEVGK AMDVEESSFL TQYPNLHPYL KNHVLNNTSS STLAIDTERL 240 ITDQSYPGLD STFHTLSTDN EKSSRFDALI SSGYNFPGSE LLEALGSGFK QTSRGLEELV 300 KSEHGSATRP TDDNMSHSQL TFDSAPENLL DAVVANVCHS DGNARDDIFS SRSVQSLLTS 360 MEMAEPSGQN KHIVSNPNDR AMNQPLVEVD TQQNPSDICG AFSSIGFSST CPSSSSDHFQ 420 TSLEMPKKNK RRAKPGESSR PRPRDRQLIQ DRIKELRELV PNGSKCSIDS LLERTIKHML 480 FLQNVTKHAD KLSKSANAKM QQKETGGQGS TCAVEVGGHL QVCSIIVENL NKHGMVLIEM 540 LCEECSHFLE ISNVIRSLDL TILRGVTEAQ GDKTWICFVV ESQSNKVMQR MDILWSLVQI 600 FQPKANGKP

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

MGSTSQEILR SLCSNTEWKY AVFWKLNHPS RMVLTLEDAY YDNHGHYNSP KNMHGAHDPL  60
GLALAKMAYH VYSLGEGIVG HVAVSGEHQW VFPDYYDNWY SASEFHNVWE SQISAAIKTI  120
LVVPVGPCGV VQLGSLLKVD EDVTLVNHIK HMFLALKDPL PDHEANLMQC NMNNSFYLPK  180
LPSECSHVEA FPNCSGEVGK AMDVEESSFL TQYPNLHPYL KNHVLNNTSS STLAIDTERL  240
ITDQSYPGLD STFHTLSTDN EKSSRFDALI SSGYNFPGSE LLEALGSGFK QTSRGLEELV  300
KSEHGSATRP TDDNMSHSQL TFDSAPENLL DAVVANVCHS DGNARDDIFS SRSVQSLLTS  360
MEMAEPSGQN KHIVSNPNDR AMNQPLVEVD TQQNPSDICG AFSSIGFSST CPSSSSDHFQ  420
TSLEMPKKNK RRAKPGESSR PRPRDRQLIQ DRIKELRELV PNGSKCSIDS LLERTIKHML  480
FLQNVTKHAD KLSKSANAKM QQKETGGQGS TCAVEVGGHL QVCSIIVENL NKHGMVLIEM  540
LCEECSHFLE ISNVIRSLDL TILRGVTEAQ GDKTWICFVV ESQSNKVMQR MDILWSLVQI  600
FQPKANGKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	425	431	PKKNKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate root development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009144244.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352985	0.0	AK352985.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-P09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009144244.1	0.0	PREDICTED: transcription factor bHLH155-like isoform X1
Swissprot	Q58G01	0.0	LHWL3_ARATH; Transcription factor bHLH155
TrEMBL	A0A397Z937	0.0	A0A397Z937_BRACM; Uncharacterized protein
TrEMBL	M4DP33	0.0	M4DP33_BRARP; Uncharacterized protein
STRING	Bra018273.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2083	20	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	0.0	conserved peptide upstream open reading frame 7

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424]