PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009144239.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 432aa    MW: 48255.9 Da    PI: 5.0122
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009144239.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-12229270854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      Er RR + N++f+ L++l+P++     +K++ a+i+ +A++YIk+L
  XP_009144239.1 229 TERERRVHFNDRFSDLKSLIPNP-----TKNDRASIVGEAIDYIKEL 270
                     59*********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.596221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-13223285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-8227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-12229282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9229270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.96E-11230275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MACFDSAEVT AESSAVPPPP PPQTLVTGST SNSNCSVDVE DLPEFHLSPQ DCPPQPSSTP  60
LQFHINPLPP CDNQYQIHQM SHDQLQQQHA NWDNGYQDFV NLGPNSSTTP DLLSLLHLPR  120
CSLPQSMLPN SFSDIMSSSS AAAVMYDPLF HLNFPLQTRD QSQQRNSSCF LGVEDQIQMD  180
ANGGGGGINM MYYEGDNNND GFDNGVIEFS SGGNNRKGRG SGKSRTFPTE RERRVHFNDR  240
FSDLKSLIPN PTKNDRASIV GEAIDYIKEL LRTIEDLKML VEKKKFGRFR SKKRARVGGE  300
EEEEEEEGDN VVYRPKSEGD QSCFSNNKAL RCSWLKRKSK VTEVDVRIID DEVTIKVVQK  360
KKINCLLFTT RVLDQLQLDL HHVAGGQIGE HYSFLFNTKI CEGSCVYASG IADTVMEVVE  420
KQYMEAVPAN GY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009144239.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144238.10.0PREDICTED: transcription factor bHLH10-like isoform X1
SwissprotQ84TK10.0BH010_ARATH; Transcription factor bHLH10
TrEMBLM4DP300.0M4DP30_BRARP; Uncharacterized protein
STRINGBra018270.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.11e-172bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]