PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009144214.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 374aa MW: 41966.5 Da PI: 6.6366

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009144214.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.4e-10	182	240	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l l+ l+ e+ XP_009144214.1 182 KRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVEN 240 9********************************************99998887777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.2E-15	178	242	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.565	180	243	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.3E-9	182	234	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.9E-10	182	233	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.4E-11	182	236	No hit	No description
CDD	cd14703	6.59E-21	183	232	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MEREKSPAPS GGLPPPSPTP INHSSDANRL SHDMSRMLEH PPKKIGHRRA HSEILTLPDD 60 LSFDSDLGVV GANAADGASF SDDTEEDLLS MYLDMDKFNS STATSSAAAQ VGELSWRNES 120 VGMHTGLTSN PPRVRHQHSH SMDGSLNISE MLVSGEGDDS VVDAKKSMSA AKLAELALID 180 PKRAKRIWAN RQSAARSKER KTRYIFELER KVQTLQTEAT TLSAQLTLLQ RDTNGLTVEN 240 NELKLRLQTM EQQVHLQDEL NEALKEEIQH LKVLTGQAAS NGASSAMNFG SFGQQQQQQQ 300 QFYSNNQSMQ TILAAQQLQQ LQLHSQKQQQ HQQQQQQQQF QFQQQQIQQL MQHRLRQQEQ 360 QNGKQKPFNG QNES

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MEREKSPAPS GGLPPPSPTP INHSSDANRL SHDMSRMLEH PPKKIGHRRA HSEILTLPDD  60
LSFDSDLGVV GANAADGASF SDDTEEDLLS MYLDMDKFNS STATSSAAAQ VGELSWRNES  120
VGMHTGLTSN PPRVRHQHSH SMDGSLNISE MLVSGEGDDS VVDAKKSMSA AKLAELALID  180
PKRAKRIWAN RQSAARSKER KTRYIFELER KVQTLQTEAT TLSAQLTLLQ RDTNGLTVEN  240
NELKLRLQTM EQQVHLQDEL NEALKEEIQH LKVLTGQAAS NGASSAMNFG SFGQQQQQQQ  300
QFYSNNQSMQ TILAAQQLQQ LQLHSQKQQQ HQQQQQQQQF QFQQQQIQQL MQHRLRQQEQ  360
QNGKQKPFNG QNES

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.11528	0.0	leaf\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009144214.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353283	0.0	AK353283.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-D07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009144214.2	0.0	PREDICTED: LOW QUALITY PROTEIN: probable transcription factor PosF21
Swissprot	Q04088	0.0	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	M4DP10	0.0	M4DP10_BRARP; Uncharacterized protein
STRING	Bra018250.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31370.5	1e-138	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]