PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009143959.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 814aa MW: 92331.9 Da PI: 6.2791

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009143959.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.3	5.4e-23	67	153	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYA++ GF +++++s++skr+g++++ + Cs+ g ++e++ + ++r+ +tgCka l++k+++d+kw++ ++ +eHnHe++p XP_009143959.1 67 FYREYARSFGFGITIKASRRSKRSGKFIDVKIACSRFGAKRESTAA---VINPRSCPKTGCKAGLHMKRKEDEKWVIVSFIKEHNHEICP 153 9*************************************999877...999*********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.7E-21	67	153	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.0E-22	236	329	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.928	513	549	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.3E-6	513	546	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.9E-5	524	551	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 814 aa Download sequence Send to blast
MVLIVLDEMD IEGVAIDLLS RNGGNVDEPC EASTSGNATS TTVEHFATLG EPQNGMEFES 60 KEAAYYFYRE YARSFGFGIT IKASRRSKRS GKFIDVKIAC SRFGAKREST AAVINPRSCP 120 KTGCKAGLHM KRKEDEKWVI VSFIKEHNHE ICPDDFYASV RGKNKPAAGA SAHQKKGLQL 180 ALEEDDFKLM LERFAEMQSK QPGFFYAVDF DSEKRIRNVF WLDVKAKQDY YSFSDVVLFD 240 TFYLRSGYRV PFAPFVGVNH HRRYALLGCA LIGEESESTY SWLFRTWRKA VGGQALGVMI 300 TDQDKVLSDV VAEVFPSARH CFSLWSVMSK IPEMVNPLDD GFTECFRDCV DGAWTDEQFE 360 RSWSEMVDKF ELNENEWLHS LFRDRRKWVP RYFHGLSFAG LSGPERCGSV VCHFDKYMNS 420 EATFSGFFEE YTKFLQYRYD VEAKDDLDSQ SKQPTLRSSL AFEKQLSLIY TDAAFKKFQA 480 EVLGVVSCQL QKEREDETTA IFRVEDFEKR RNFFVSVNKE VLDVCCSCYL FEYQGFLCKH 540 AMIVLQNSDV SCIPSQYILK RWSKKGNNRE EKHEEGAAVD NRMARFDDLC QRFVKLGEVA 600 SLSDEAYKTA LQFLEKNLKK CVSVNSSPKL MTSGSIGFEN EGMLDSASKL SKKKKTQKKR 660 KAYNGPEDVT NGSEELRQEP EQVSSRAPTF ENCYIPQAAD MEATELGSHA APLGIYYSTQ 720 QTIGFSSVSS GQEGYYGYPA TIQAMGNLHS VHGRMNQYET QPSIQGAFQG QTGFRGSAIR 780 GGYDMEETLH DMTMESSQFQ GSGPSHPGDH RLSH

Sequence ? help Back to Top

Protein Sequence Length: 814 aa Download sequence Send to blast

MVLIVLDEMD IEGVAIDLLS RNGGNVDEPC EASTSGNATS TTVEHFATLG EPQNGMEFES  60
KEAAYYFYRE YARSFGFGIT IKASRRSKRS GKFIDVKIAC SRFGAKREST AAVINPRSCP  120
KTGCKAGLHM KRKEDEKWVI VSFIKEHNHE ICPDDFYASV RGKNKPAAGA SAHQKKGLQL  180
ALEEDDFKLM LERFAEMQSK QPGFFYAVDF DSEKRIRNVF WLDVKAKQDY YSFSDVVLFD  240
TFYLRSGYRV PFAPFVGVNH HRRYALLGCA LIGEESESTY SWLFRTWRKA VGGQALGVMI  300
TDQDKVLSDV VAEVFPSARH CFSLWSVMSK IPEMVNPLDD GFTECFRDCV DGAWTDEQFE  360
RSWSEMVDKF ELNENEWLHS LFRDRRKWVP RYFHGLSFAG LSGPERCGSV VCHFDKYMNS  420
EATFSGFFEE YTKFLQYRYD VEAKDDLDSQ SKQPTLRSSL AFEKQLSLIY TDAAFKKFQA  480
EVLGVVSCQL QKEREDETTA IFRVEDFEKR RNFFVSVNKE VLDVCCSCYL FEYQGFLCKH  540
AMIVLQNSDV SCIPSQYILK RWSKKGNNRE EKHEEGAAVD NRMARFDDLC QRFVKLGEVA  600
SLSDEAYKTA LQFLEKNLKK CVSVNSSPKL MTSGSIGFEN EGMLDSASKL SKKKKTQKKR  660
KAYNGPEDVT NGSEELRQEP EQVSSRAPTF ENCYIPQAAD MEATELGSHA APLGIYYSTQ  720
QTIGFSSVSS GQEGYYGYPA TIQAMGNLHS VHGRMNQYET QPSIQGAFQG QTGFRGSAIR  780
GGYDMEETLH DMTMESSQFQ GSGPSHPGDH RLSH

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009143959.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009143959.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
Refseq	XP_018514800.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A397ZCM3	0.0	A0A397ZCM3_BRACM; Uncharacterized protein
STRING	Bo4g045820.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	0.0	FAR1-related sequence 2

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]