PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143736.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 412aa    MW: 44316.9 Da    PI: 5.7054
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143736.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY993e-31205263259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+
  XP_009143736.1 205 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSEHNHP 263
                     699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-31198265IPR003657WRKY domain
PROSITE profilePS5081133.361199265IPR003657WRKY domain
SuperFamilySSF1182901.02E-26202265IPR003657WRKY domain
SMARTSM007741.5E-38204264IPR003657WRKY domain
PfamPF031063.5E-26206263IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MCSVSASLDM DNFQGDLTDV VRGIGSGHVS SSTGPSPSSL SPPPISDVPS VASCQINPFG  60
DPFVSMADPL FNLTANKSNN SFEVFPEVSE DDHIKSKCSV FPRIQISQSN IIQDASKCSS  120
PAMAVSSAVA AASPWGMINV VSTNSPRNCS MVDNSNNTSS SSQIQISSSP RNLGIKKRKG  180
QGKKVVCIPA PAAINSRSSG EVVPSDLWAW RKYGQKPIKG SPYPRGYYRC SSSKGCPARK  240
QVERSRTDPN MLVITYTSEH NHPWPTQRNA LAGSTRSSIS SSSNPSSKSL TSIATATTSS  300
SSRVSQNKDE PNKSHLASSS TPPSPYVAAA VKEEDVEERQ NKMEFDNDPD NTYRPEFQHQ  360
PEGFFADLDE LEEDSLTMLL SQGFSGGGNL ENKTTIPDVF SDFFDDDSSR SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-25183266680Disease resistance protein RRS1
5w3x_D2e-25183266680Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169178PRNLGIKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143736.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0121670.0FJ012167.1 Brassica napus WRKY35 transcription factor (WRKY35) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143736.10.0PREDICTED: probable WRKY transcription factor 35
RefseqXP_022570538.10.0probable WRKY transcription factor 35
SwissprotO647470.0WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLA0A397ZHK10.0A0A397ZHK1_BRACM; Uncharacterized protein
STRINGBra005388.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-154WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]