PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143660.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 395aa    MW: 42070.2 Da    PI: 5.2958
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143660.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.56e-23288350163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     ++e+kr++rkq+NRe+ArrsR+RK+ae++eL+++++ L +eN +L+ e+++lk ++++l+se+
  XP_009143660.1 288 DREIKRQKRKQSNRESARRSRLRKQAECDELAQRAELLNEENATLRAEINRLKSQCDELTSEN 350
                     689**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.4E-261101IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.1E-40141257No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-17281347No hitNo description
SMARTSM003381.1E-21288352IPR004827Basic-leucine zipper domain
PfamPF001701.8E-20289350IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.059290353IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.13E-11291347No hitNo description
CDDcd147022.77E-25293344No hitNo description
PROSITE patternPS000360295310IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MASNEMEKSS KEKEPTTPPP PPPSSQEPSS AVSAGMATPD WSGFQAYSPM PPHGFVASSP  60
QPHPYMWGVQ HMNMMPPYGT PPHPYVAMYP PGGMYGHPSM PPGSYPYSPY TMPSPNGMTE  120
ASGNTTGGTE GGDAKQSEVK EKLPIKRSRG SLGSLNMITG KNNEPGKNSG ASANGAYSKS  180
GESVSDGSSE GSDANSQNGS GSGQEGRDEN GDSANAPRNG TPVSQTVPIM PMPAAGPPTN  240
LNIGMEYWGA PTSAAIPGMH GKASAPVPGV AAPVSRDGGH SQPWLQDDRE IKRQKRKQSN  300
RESARRSRLR KQAECDELAQ RAELLNEENA TLRAEINRLK SQCDELTSEN TSLKDQLLSF  360
PSLEGINMDK DDQEPETYQT GVTERKADDT YKSST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304310RRSRLRK
2304311RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935770.0AB493577.1 Arabidopsis thaliana At2g35530 mRNA for hypothetical protein, partial cds, clone: RAAt2g35530.
GenBankBT0220550.0BT022055.1 Arabidopsis thaliana At2g35530 gene, complete cds.
GenBankBT0264410.0BT026441.1 Arabidopsis thaliana At2g35530 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143660.10.0PREDICTED: bZIP transcription factor 16-like
SwissprotQ501B20.0BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A078GZ090.0A0A078GZ09_BRANA; BnaA05g08520D protein
STRINGBra005335.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.10.0basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]