PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 337aa MW: 38652.9 Da PI: 8.6384

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009143403.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.1e-32	57	110	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+ave+LGG+e+AtPk ++++m++kgL+++hvkSHLQ+YR+ XP_009143403.1 57 PRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRS 110 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.5E-29	53	111	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.273	53	113	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-14	55	111	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-22	57	112	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-9	58	109	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MIPNMEGSVK TTDREEEEEE EEEEGEGEES KVSSNTTVEA EVGKKTKVRP YVRSKVPRLR 60 WTPDLHLRFV RAVERLGGQE RATPKLVRQM MNIKGLSIAH VKSHLQMYRS KKMDDQGQAI 120 ADNRHFIESS TDRNIYKLSQ LPMFRGYNTN HSHDSPFRYG SRFSNASLWN SSSHETNRSL 180 IDRTGLIRGS SVNNNIHGSE YWTNNRSFQN TYSSSVSNHL PKLRHNHQER NNLATFNSIQ 240 GHSRTFEKFE TGIEERTNHV YCTKTTGKRN ASTSLDLDLS LKLRVPEETT LEETETATTD 300 QTLSLSLCSW KKSRVIKTDE EDRTVKIGQA STLDLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	9e-17	58	112	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-17	58	112	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-17	58	112	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-17	58	112	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009143403.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009143403.1	0.0	PREDICTED: putative Myb family transcription factor At1g14600
TrEMBL	A0A3P5Z7B1	0.0	A0A3P5Z7B1_BRACM; Uncharacterized protein
TrEMBL	M4CLN7	0.0	M4CLN7_BRARP; Uncharacterized protein
STRING	Bra005124.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-168	G2-like family protein