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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009143398.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
NAC |
Protein Properties |
Length: 300aa MW: 33791 Da PI: 7.9562 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009143398.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 169.4 | 1.1e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
lppGfrF Ptdeel+v+yL++kv+g +++l ++i ++d+yk++PwdLp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk ++s
XP_009143398.1 14 LPPGFRFYPTDEELLVQYLCRKVAGYHFSL-QIIGDIDLYKFDPWDLPSKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIMS- 106
79***************************9.89***************8777899***************************************. PP
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
+g+ vg+kk Lvfy g+apkg+kt+W+mheyrl
XP_009143398.1 107 DGHRVGIKKALVFYAGKAPKGTKTNWIMHEYRL 139
999****************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MGVREKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGYH FSLQIIGDID LYKFDPWDLP 60 SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIIMSDGHR VGIKKALVFY 120 AGKAPKGTKT NWIMHEYRLI EHSRSHGSSK LDDWVLCRIY KKTSGSQRQA VASPVQACLE 180 DQSTNMSSSP SSSSQLDDVL DSFPEMKDRS FDLPRMNSLR TILNGNFEWA SLAGLNPMPE 240 LAPMTYGLSN YGGYHAFQSA ESGCRSSQVD QEQNSTELTQ SLGYSSSGFG LSGQMYEFRQ
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3swm_A | 1e-107 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-107 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-107 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-107 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-107 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-107 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-107 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-107 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in leaves and in root pericycle and epidermis. {ECO:0000269|PubMed:15319476, ECO:0000269|PubMed:16581911}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:15319476, ECO:0000269|Ref.7}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KC966756 | 0.0 | KC966756.1 Brassica napus NAC transcription factor 72 (NAC72.1) mRNA, complete cds. |