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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009143179.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | BES1 | ||||||||
Protein Properties | Length: 676aa MW: 75522 Da PI: 6.2356 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 144.2 | 1.1e-44 | 60 | 189 | 1 | 128 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 ggs+r+++ +E+E++k+RER+RRai+a+i+ GLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ s+ ++ ++++g s+ +++s+ XP_009143179.1 60 GGSRRSRPVEEKERTKLRERHRRAITARILGGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSKSQGTKPPAVVGGSSASHQSSPPA 154 689*******************************************************************8888888889999999999999999 PP DUF822 96 .sslkssalaspvesysaspksssfps.pssldsi 128 + s +sp+e +++k + p ps +d XP_009143179.1 155 lRGGSLSGHRSPTELNTCRMKGVFAPTtPSPYDVQ 189 4445558899***********99887524445444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 3.5E-38 | 61 | 194 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 6.6E-171 | 228 | 672 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 6.4E-186 | 231 | 673 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 6.9E-93 | 237 | 656 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.4E-63 | 268 | 282 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.4E-63 | 289 | 307 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.4E-63 | 311 | 332 | IPR001554 | Glycoside hydrolase, family 14 |
PROSITE pattern | PS00506 | 0 | 315 | 323 | IPR018238 | Glycoside hydrolase, family 14, conserved site |
PRINTS | PR00750 | 2.4E-63 | 404 | 426 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.4E-63 | 477 | 496 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.4E-63 | 511 | 527 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.4E-63 | 528 | 539 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.4E-63 | 546 | 569 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.4E-63 | 586 | 608 | IPR001554 | Glycoside hydrolase, family 14 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MVTDMQKLLG ASEEDEEEEM DADVKEEDDG NRGSHAASGS SNDEFMFHQS SMQDQVDTPG 60 GSRRSRPVEE KERTKLRERH RRAITARILG GLRRHGNYNL RVRADINDVI AALAREAGWV 120 VLPDGTTFPS KSQGTKPPAV VGGSSASHQS SPPALRGGSL SGHRSPTELN TCRMKGVFAP 180 TTPSPYDVQS SELVGSLNKA DGLIGCPVDV INSKQILEIP PNLTEQDFSG TPYVPVYVML 240 PLGVINMKCE LADRDGLLKH LRILKSIQVD GVKVDCWWGI AECHSPQEYN WNGYRQLFQI 300 VRDLNLKIQV LMSFHECGGN VGDDVCIPLP HWVAEIGRTN PDIYFTDREG RRNPECLSWG 360 IDKERVLRGR TALEVYFDYM RSFRIELGEF VEDGVISMVE IGLGPCGELR YPSCPIKHGW 420 RYPGVGEFQC YDKYLLKSLR KAAESRGHPF WARGPENAGS YNSQPQGTGF FCDGGDYDGL 480 YGRFFLKWYS QVLIDHADKV LSLAKLVFDT SCIAAKLPDV HWWYRTASHA AELTAGFYNP 540 SNRDGYAEIA STLKKHGAAL SFVSGEVQVL NRPDDFSGAL GEPEAVAWQV LNAAWDTDTP 600 IARENSLPCH DRVGFNKMLE SVKFPNDPDR RHLSSFAYSR LVPALMEGHN LVEFDRFVKK 660 LHGEAVMDHQ HHHQQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wdq_A | 1e-139 | 233 | 664 | 11 | 444 | Beta-amylase |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009143179.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227323 | 0.0 | AK227323.1 Arabidopsis thaliana mRNA for putative beta-amylase, complete cds, clone: RAFL14-01-P19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009143179.1 | 0.0 | PREDICTED: beta-amylase 7 isoform X1 | ||||
Refseq | XP_013748118.1 | 0.0 | beta-amylase 7-like | ||||
Swissprot | O80831 | 0.0 | BAM7_ARATH; Beta-amylase 7 | ||||
TrEMBL | M4CL58 | 0.0 | M4CL58_BRARP; Beta-amylase | ||||
STRING | Bra004944.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2945 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45880.1 | 0.0 | beta-amylase 7 |
Publications ? help Back to Top | |||
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