PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143166.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 786aa    MW: 86359.8 Da    PI: 6.8483
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143166.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.92.6e-21104159156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe++F+++++p++++r +L+++l+L++rqVk+WFqNrR+++k
  XP_009143166.1 104 KKRYHRHTPHQIQELESVFKECPHPDEKQRLDLSRRLNLDTRQVKFWFQNRRTQMK 159
                     688999***********************************************999 PP
2START186.21.7e-583095343206
                     HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                     a  a++elvk+a+ +ep+W +ss    e++n++e+ ++f +  +     + +ea++++g+v+ ++  lve+l+d+  +W e+++    k +t+e 
  XP_009143166.1 309 AVFAMDELVKMAQTSEPLWIQSSkgkrEMLNREEYDKSFRPCLGpkpggFVSEASKEVGMVIINSLALVETLMDSE-RWAEMFPcmiaKNSTIEI 402
                     66689******************999999999999999977555999999**************************.****************** PP

                     ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwveh 169
                     issg      ga+qlm+aelq+lsplvp R ++f+R+++q+ +g+w++vdvSvd  +++       s+  +++lpSg+l+++++ng+skvtw++h
  XP_009143166.1 403 ISSGmggtrnGAIQLMQAELQLLSPLVPvRQVTFLRFCKQHAEGVWAVVDVSVDRVSDRGGsasARSSLSCRRLPSGCLVHDMPNGYSKVTWIDH 497
                     *********************************************************9987666778888************************* PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++  +h  +r+lv+sgla+g k+wv++lqrqce+
  XP_009143166.1 498 TEYDETNIHHSYRPLVSSGLAFGSKRWVSALQRQCES 534
                     ***********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.1E-2189161IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-2192161IPR009057Homeodomain-like
PROSITE profilePS5007117.572101161IPR001356Homeobox domain
SMARTSM003891.5E-20102165IPR001356Homeobox domain
CDDcd000861.83E-19104161No hitNo description
PfamPF000466.1E-19104159IPR001356Homeobox domain
PROSITE patternPS000270136159IPR017970Homeobox, conserved site
PROSITE profilePS5084842.76298537IPR002913START domain
SuperFamilySSF559612.61E-28301535No hitNo description
CDDcd088755.80E-107302533No hitNo description
SMARTSM002341.8E-48307534IPR002913START domain
PfamPF018521.3E-50310534IPR002913START domain
SuperFamilySSF559612.61E-21564778No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MNFSGFLHHD DDKTPGGETV GGGNHFFSPA TAMSGGPVQF SSPRLSLGLQ TNVENNGGEV  60
GRTGESFEVS VTRRSPESRS GSDNVEALSG EDDLDASDRP LKKKKRYHRH TPHQIQELES  120
VFKECPHPDE KQRLDLSRRL NLDTRQVKFW FQNRRTQMKT QIERHENSLL RQENDKLRAE  180
NMSVREAMRN PMCGHCGASA VLGEISLEEH QLRIENSRLK DELDRLCALA GKFINRSDDA  240
GSHQLPNSTL KLGVGSRNVD AGGGFTLLHP AFEISSSHFY SGLSAPVNRT GTDIASGGVD  300
EKSFYLELAV FAMDELVKMA QTSEPLWIQS SKGKREMLNR EEYDKSFRPC LGPKPGGFVS  360
EASKEVGMVI INSLALVETL MDSERWAEMF PCMIAKNSTI EIISSGMGGT RNGAIQLMQA  420
ELQLLSPLVP VRQVTFLRFC KQHAEGVWAV VDVSVDRVSD RGGSASARSS LSCRRLPSGC  480
LVHDMPNGYS KVTWIDHTEY DETNIHHSYR PLVSSGLAFG SKRWVSALQR QCESLAILMS  540
SAIPNRSKPT PAISSIGKKS MLRLAQRMTE NFCRGVCASS SQKWSKLDIG NIDEDVRIMT  600
RKNVNDSGEP PGILLSAATS VWVPVTPRRL FDFLRDELLR SEWDILSNGG PMQEIANIFK  660
GQDHSNSVSL LRSTAMNASQ SSMLILQETS IDASGAVVVY APVDIPAMHS VMNGGDSAYV  720
ALLPSGFAIL PDGQGTEETG SLLTVAFQIL VNSLPTAKLN VESIETVSNL ISCTVQKIRA  780
ALRCEK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes forming at the base of young leaves, in endodermal cell lines around emergent lateral roots and in the epidermal layer of the stamen filament. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143166.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143166.10.0PREDICTED: homeobox-leucine zipper protein HDG1-like isoform X1
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLM4CL480.0M4CL48_BRARP; Uncharacterized protein
STRINGBra004934.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]