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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009143166.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 786aa MW: 86359.8 Da PI: 6.8483 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.9 | 2.6e-21 | 104 | 159 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r +L+++l+L++rqVk+WFqNrR+++k XP_009143166.1 104 KKRYHRHTPHQIQELESVFKECPHPDEKQRLDLSRRLNLDTRQVKFWFQNRRTQMK 159 688999***********************************************999 PP | |||||||
2 | START | 186.2 | 1.7e-58 | 309 | 534 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS START 3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 a a++elvk+a+ +ep+W +ss e++n++e+ ++f + + + +ea++++g+v+ ++ lve+l+d+ +W e+++ k +t+e XP_009143166.1 309 AVFAMDELVKMAQTSEPLWIQSSkgkrEMLNREEYDKSFRPCLGpkpggFVSEASKEVGMVIINSLALVETLMDSE-RWAEMFPcmiaKNSTIEI 402 66689******************999999999999999977555999999**************************.****************** PP ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS START 85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwveh 169 issg ga+qlm+aelq+lsplvp R ++f+R+++q+ +g+w++vdvSvd +++ s+ +++lpSg+l+++++ng+skvtw++h XP_009143166.1 403 ISSGmggtrnGAIQLMQAELQLLSPLVPvRQVTFLRFCKQHAEGVWAVVDVSVDRVSDRGGsasARSSLSCRRLPSGCLVHDMPNGYSKVTWIDH 497 *********************************************************9987666778888************************* PP EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++++ +h +r+lv+sgla+g k+wv++lqrqce+ XP_009143166.1 498 TEYDETNIHHSYRPLVSSGLAFGSKRWVSALQRQCES 534 ***********************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.1E-21 | 89 | 161 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-21 | 92 | 161 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.572 | 101 | 161 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-20 | 102 | 165 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.83E-19 | 104 | 161 | No hit | No description |
Pfam | PF00046 | 6.1E-19 | 104 | 159 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 136 | 159 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 42.76 | 298 | 537 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.61E-28 | 301 | 535 | No hit | No description |
CDD | cd08875 | 5.80E-107 | 302 | 533 | No hit | No description |
SMART | SM00234 | 1.8E-48 | 307 | 534 | IPR002913 | START domain |
Pfam | PF01852 | 1.3E-50 | 310 | 534 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.61E-21 | 564 | 778 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 786 aa Download sequence Send to blast |
MNFSGFLHHD DDKTPGGETV GGGNHFFSPA TAMSGGPVQF SSPRLSLGLQ TNVENNGGEV 60 GRTGESFEVS VTRRSPESRS GSDNVEALSG EDDLDASDRP LKKKKRYHRH TPHQIQELES 120 VFKECPHPDE KQRLDLSRRL NLDTRQVKFW FQNRRTQMKT QIERHENSLL RQENDKLRAE 180 NMSVREAMRN PMCGHCGASA VLGEISLEEH QLRIENSRLK DELDRLCALA GKFINRSDDA 240 GSHQLPNSTL KLGVGSRNVD AGGGFTLLHP AFEISSSHFY SGLSAPVNRT GTDIASGGVD 300 EKSFYLELAV FAMDELVKMA QTSEPLWIQS SKGKREMLNR EEYDKSFRPC LGPKPGGFVS 360 EASKEVGMVI INSLALVETL MDSERWAEMF PCMIAKNSTI EIISSGMGGT RNGAIQLMQA 420 ELQLLSPLVP VRQVTFLRFC KQHAEGVWAV VDVSVDRVSD RGGSASARSS LSCRRLPSGC 480 LVHDMPNGYS KVTWIDHTEY DETNIHHSYR PLVSSGLAFG SKRWVSALQR QCESLAILMS 540 SAIPNRSKPT PAISSIGKKS MLRLAQRMTE NFCRGVCASS SQKWSKLDIG NIDEDVRIMT 600 RKNVNDSGEP PGILLSAATS VWVPVTPRRL FDFLRDELLR SEWDILSNGG PMQEIANIFK 660 GQDHSNSVSL LRSTAMNASQ SSMLILQETS IDASGAVVVY APVDIPAMHS VMNGGDSAYV 720 ALLPSGFAIL PDGQGTEETG SLLTVAFQIL VNSLPTAKLN VESIETVSNL ISCTVQKIRA 780 ALRCEK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes forming at the base of young leaves, in endodermal cell lines around emergent lateral roots and in the epidermal layer of the stamen filament. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009143166.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009143166.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG1-like isoform X1 | ||||
Swissprot | Q9M2E8 | 0.0 | HDG1_ARATH; Homeobox-leucine zipper protein HDG1 | ||||
TrEMBL | M4CL48 | 0.0 | M4CL48_BRARP; Uncharacterized protein | ||||
STRING | Bra004934.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1128 | 27 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 0.0 | homeodomain GLABROUS 1 |
Publications ? help Back to Top | |||
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