PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143060.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 302aa    MW: 33619.5 Da    PI: 9.9497
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143060.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.36.3e-2143134187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 
                     +W+ +e+ aLi+++re++++l+rg+lk+++We+v++++  +  g+  +++++qC++k+e+l++ry+++ +++++   ++ +s++++++++ea
  XP_009143060.1  43 CWSLEETTALIDGYREKWHALGRGNLKANHWEDVAEAVaaACPGVapRKTAVQCRHKMEKLRQRYRAEIQRARSVpVARFVSSWVHYKRMEA 134
                     7***********************************9977334444488*************************977999**********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-1842135No hitNo description
PROSITE profilePS500906.37744104IPR017877Myb-like domain
SMARTSM005951.3E-951140IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSDPDSPPTH DPIPDRDQPE PASATDPKLP SVPKSSRRLP PPCWSLEETT ALIDGYREKW  60
HALGRGNLKA NHWEDVAEAV AAACPGVAPR KTAVQCRHKM EKLRQRYRAE IQRARSVPVA  120
RFVSSWVHYK RMEAMEITKP DSEENQFSGG CPTPRFFNRN GGGGGGGIRI RIPTGVSIAQ  180
PGPRIEPKSF GISTNPRPGR VVGTGSSYGA RVVGGGSEMK MMCDDPIGSA IKLLGDAMLR  240
TEEKKMEMTR EIEGMRMEME MKRTKMVLES QQRIVEAFAR TMSENLEEEK KMKKARRMSS  300
VE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.26320.0flower| silique
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3155982e-75AJ315598.1 Brassica napus microsatellite, clone Na10-F06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143060.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLM4CKX30.0M4CKX3_BRARP; Uncharacterized protein
STRINGBra004859.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89632534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.16e-79Trihelix family protein