PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142915.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 306aa    MW: 33209.7 Da    PI: 7.5336
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142915.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11240285655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  XP_009142915.1 240 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVEHIKGLQ 285
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.056234284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-15237298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-11238289No hitNo description
Gene3DG3DSA:4.10.280.101.3E-13239296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-13240290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-9240285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MYPPPPSSSK STVPDGGDAN NNGYDSAAGA TRDFSSLGSQ SHYNPPRQQQ DPNVVGLGDC  60
FPDDPSNIGF DPGASSSSPL FRHRSSPAGF YDQHLPTVNG FSLGRPNGGY GGGERGPSGL  120
KPELRFSGGS SSSSHQERNS LQRISEVEAA AAAIKGVPST SMTFGNDHNN WDNSSSHISF  180
TIDEPGKRSK TTDFFTLETQ FSMPQTSLEM ARMESMMNIP EDSVPCRTRA KRGCATHPRS  240
IAERERRTRI SGKLKKLQEL VPNMDKQTSY ADMLDLAVEH IKGLQQQVES LEKGMERCTC  300
GACKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.265421e-171flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142915.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142915.10.0PREDICTED: transcription factor bHLH129
RefseqXP_013717348.10.0transcription factor bHLH129-like
SwissprotQ9ZW811e-128BH129_ARATH; Transcription factor bHLH129
TrEMBLM4CKL30.0M4CKL3_BRARP; Uncharacterized protein
STRINGBra004748.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103291833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.21e-116bHLH family protein