PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142723.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 250aa    MW: 27835.6 Da    PI: 7.9137
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142723.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-1069115354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+h+e+ErrRR+riNs +++Lr +l  +      K +Ka+ L k+v+ +k+L
  XP_009142723.1  69 RNHKEAERRRRERINSHLNKLRNVLSCN-----SKTDKATLLAKVVQRVKEL 115
                     58***********************997.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.53866115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-1269128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-1269129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-869115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-972121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MQPESSDQML YSFLSGNQIS GGGYCGSDDY LSTMQSLCGS SSSTSSYYPL AISGIGETMA  60
QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD KATLLAKVVQ RVKELKQQTL  120
EISESDQTLL PSETDEISVL HYGDYSNDGH IIFKASLCCD DRSDLLPDLM EILKSLHMKT  180
LRADMVTLGG RTRSVLVVAA DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGERSKR  240
RRALDQIIMV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17479ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142723.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1190590.0AK119059.1 Arabidopsis thaliana At2g41130 mRNA for putative bHLH transcription factor (bHLH106), complete cds, clone: RAFL21-40-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142723.10.0PREDICTED: transcription factor bHLH106-like
SwissprotO806741e-148BH106_ARATH; Transcription factor bHLH106
TrEMBLM4CK650.0M4CK65_BRARP; Uncharacterized protein
STRINGBra004599.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-131bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]