PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 281aa MW: 31565.9 Da PI: 9.5999

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009142721.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50	6.3e-16	212	259	6	54
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +++++kNRe+A rsR+RK+ ++ eLe kv +Le+eNk+L+ +l+e +k XP_009142721.1 212 MQKKMIKNRESAARSRARKQVYTHELEIKVSSLEEENKKLR-RLKEVEK 259 58**************************************9.8887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.1E-13	204	253	No hit	No description
SMART	SM00338	9.1E-8	206	263	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.22	209	253	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.88E-19	211	256	No hit	No description
SuperFamily	SSF57959	2.19E-9	211	253	No hit	No description
Pfam	PF00170	5.5E-12	212	253	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	214	229	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MGSLRGNAEE PISQSLPRQN SLYSLKLHEV QNHLGSSAKP LGSMNLDELL KSVWSAEATN 60 QPPEATEAGL PRQGSLALPR GLSKKTVEEV WRDIQHDKNG SSGNPHGERI DSNNNKRPTL 120 GEITLEDLLL KAGVVTETVL PQNVVNVASN EPWIQYHHPQ HQQQGFMPYP VCEMQEMVSP 180 MNMMMGDAPQ AHGRKRVAPS GGDIVERVVE RMQKKMIKNR ESAARSRARK QVYTHELEIK 240 VSSLEEENKK LRRLKEVEKI LPSEPPPDPK WKLRRTSSAS F

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009142721.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009142721.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 3
Swissprot	Q9C5Q2	1e-136	AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBL	A0A397Z5V6	0.0	A0A397Z5V6_BRACM; Uncharacterized protein
TrEMBL	M4CK63	0.0	M4CK63_BRARP; Uncharacterized protein
STRING	Bra004597.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1884	28	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	1e-124	bZIP family protein

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Rep., 2016. 35(1): p. 155-66 [PMID:26441053] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153]