PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142679.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HRT-like
Protein Properties Length: 452aa    MW: 50698.8 Da    PI: 8.9888
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142679.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like54.71.7e-17264294131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     +CGv+le+G +C+r+PvkgRKRC eHKG+Ri
  XP_009142679.1 264 VCGVLLENGDCCSRSPVKGRKRCLEHKGQRI 294
                     7*****************************7 PP
2HRT-like50.73e-16321351131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     +CGvil +  +C++ Pv+gRKRCe HKGmRi
  XP_009142679.1 321 TCGVILPNMEPCSKRPVPGRKRCEDHKGMRI 351
                     7*****************************7 PP
3HRT-like29.61.2e-09377404229
        HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGm 29 
                     C +++++G +C+r+  kg KRC++HK++
  XP_009142679.1 377 CEATTKNGVPCTRSSPKGSKRCWQHKDK 404
                     99************************85 PP
4HRT-like58.41.2e-18418448131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     +CGv+  dG vC+r+PvkgRKRCeeHKGmR+
  XP_009142679.1 418 TCGVKVFDGLVCERSPVKGRKRCEEHKGMRV 448
                     7*****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MGMDFGNGLS FAAIVPTVYK REDYKRTKHD AVFSNWKVLI GSEDWEDFKK GKDGVGRYRV  60
QNLPRKSCPG LYELGVAVID QARKLDSDDV LAAYLGQAES VRSRLQSYGR SGAHLRTVNN  120
NNLDGCCESP PDKKAGLFED IFMKHGSVVY RWAPMGSKRE AEATEGMLLS TFDYAWNKGS  180
NGERRHLDLL NKLGDLEFIS NRESGVSRVL FPFLRNQERN LSCDVVVGEE EKSTSTKLSR  240
SRPQPVSDKS DEIFSGGSCC SDSVCGVLLE NGDCCSRSPV KGRKRCLEHK GQRICRVSPV  300
KPHPETFITR RQDYNTDVVT TCGVILPNME PCSKRPVPGR KRCEDHKGMR INAFLFLLNR  360
TDREKTVKEE ASKPSFCEAT TKNGVPCTRS SPKGSKRCWQ HKDKENIHPV VAAETQVTCG  420
VKVFDGLVCE RSPVKGRKRC EEHKGMRVII MT
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During embryogenesis, expressed in the embryo at the late torpedo/cotyledon stage, at the onset of maturation. Not expressed during early stages of seed development or in mature seeds. {ECO:0000269|PubMed:22226340}.
UniprotTISSUE SPECIFICITY: Expressed in vascular tissues of stems, hypocotyls, leaves and flowers. Expressed in the vascular bundles of xylem in shoot parenchyma cells. Expressed in the remnant cytoplasm of differentiated fiber cells and in protoxylem element of parenchymal cells. {ECO:0000269|PubMed:17991462}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269|PubMed:17991462, ECO:0000269|PubMed:22226340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142679.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133927e-51AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19.
GenBankCP0026887e-51CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142679.10.0PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2-like
SwissprotF4K9330.0ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLM4CK250.0M4CK25_BRARP; Uncharacterized protein
STRINGBra004559.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.10.0effector of transcription2