PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009142650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 285aa MW: 32201.1 Da PI: 5.1173 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.5 | 1.1e-27 | 101 | 161 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqKe++gs +pr+Y+rCt++ +C + k+v++s++dp+++e++Y g+H+++ XP_009142650.1 101 DDGYCWRKYGQKEIHGSINPRGYFRCTHRftqNCLAVKQVQKSDRDPSIFEVKYVGSHTCN 161 8***************************9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-25 | 93 | 162 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.138 | 95 | 163 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.09E-23 | 98 | 161 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.5E-35 | 100 | 162 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.2E-23 | 101 | 160 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MVMEEKLVIN ELEQGRELAQ RLMSNLKDTS SIESSKNLIS EILSIYQNAI SMLDDKKVLK 60 RSREIDDKDS KNVIKKRQVF EKKTEKVSFF VGAGQEKGSI DDGYCWRKYG QKEIHGSINP 120 RGYFRCTHRF TQNCLAVKQV QKSDRDPSIF EVKYVGSHTC NNTTTSPKTP NFSISMFQQE 180 DIKPTKTEEA MMSLEDLEST KNIFRTFSFS NYEIENAGGG WKGNLFHEDQ LSPAATTSGS 240 GITSEVATAP ASVENSETAD SYFSSLDNII DFGPDWLLSC DVLNW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-21 | 99 | 160 | 7 | 68 | OsWRKY45 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in guard cells, hypocotyls, and in the vascular tissues of cotyledon and root (PubMed:24773321). Mostly expressed in roots, at lower levels in leaves and petioles, and, to a lower extent, in stems, flowers and siliques (PubMed:22325892). {ECO:0000269|PubMed:22325892, ECO:0000269|PubMed:24773321}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of osmotic stress responses and stomatal movement (PubMed:24773321). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Positive regulator of EDS1-dependent defense against E.amylovora (PubMed:22316300). Together with WRKY70 and WRKY53, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). Together with WRKY54 and WRKY70, promotes brassinosteroid (BR)-regulated plant growth but prevent drought response by modulating gene expression (PubMed:28576847). {ECO:0000250, ECO:0000269|PubMed:22316300, ECO:0000269|PubMed:22325892, ECO:0000269|PubMed:24773321, ECO:0000269|PubMed:28576847}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00112 | ampDAP | Transfer from AT2G46400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009142650.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt and hydrogen peroxide treatments (PubMed:24773321). Induced by salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Up-regulated by E.amylovora (PubMed:22316300). Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22316300, ECO:0000269|PubMed:22325892, ECO:0000269|PubMed:24773321}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM585284 | 0.0 | HM585284.1 Brassica rapa subsp. chinensis WRKY46 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009142650.1 | 0.0 | PREDICTED: probable WRKY transcription factor 46 | ||||
Refseq | XP_013671531.1 | 0.0 | probable WRKY transcription factor 46 | ||||
Refseq | XP_013710134.1 | 0.0 | probable WRKY transcription factor 46 | ||||
Refseq | XP_013752002.1 | 0.0 | probable WRKY transcription factor 46 | ||||
Swissprot | Q9SKD9 | 1e-142 | WRK46_ARATH; Probable WRKY transcription factor 46 | ||||
TrEMBL | M4CK06 | 0.0 | M4CK06_BRARP; Uncharacterized protein | ||||
STRING | Bra004540.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4888 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 1e-144 | WRKY DNA-binding protein 46 |
Publications ? help Back to Top | |||
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