PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142636.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 486aa    MW: 54270.4 Da    PI: 5.2973
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142636.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.1e-14321367455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YIk+Lq
  XP_009142636.1 321 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYIKELQ 367
                     799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-5050232IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.93E-18316376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.536317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.66E-15320371No hitNo description
Gene3DG3DSA:4.10.280.103.2E-17321376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-11321367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-17323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MNTSDVVGWE DEDSRSMASA VLGNSASEFL TANSNSNQNL FLVMGTDDGL NEKLSRLVDC  60
PNSETFSWNY AVFWQQTVSR SGQQVLAWGD GCCREPKEEE STVCYNLEEE MRWQYMRKRV  120
LQKLHRMFGG SDEDDYALSL ENVTATEMFF LASMYFFFNH GEGGPGRCFA SGRHVWLSDA  180
VGSDYCFRSF MVKSAGIRTV VMVPTDAGVL ELGSVWPLPE NVELVRSVQA LFMRRVKPPN  240
MSGGKIHKLF GQELNSSDKV AHQVQENVNV VVVEDTNHKV MKTSCNEKRP ASLLPGVAVV  300
EEKRPRKRGR KPANGREEAL NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI  360
SYIKELQERV KIIEAEGVMT IGTEESQEVV DIQAGEEEVV VRVVSPLESH PASRIIQAMR  420
NSEVVSVVES KLSLAEETLF HTFVVKNNNG SDPMTKEKLI AAAYPQTGLT QQLLLPSSTS  480
QVSGDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-26315378265Transcription factor MYC2
5gnj_B1e-26315378265Transcription factor MYC2
5gnj_E1e-26315378265Transcription factor MYC2
5gnj_F1e-26315378265Transcription factor MYC2
5gnj_G1e-26315378265Transcription factor MYC2
5gnj_I1e-26315378265Transcription factor MYC2
5gnj_M1e-26315378265Transcription factor MYC2
5gnj_N1e-26315378265Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302310KRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.181500.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In seedlings, mainly expressed in root tips, cotyledons, hypocotyls, and leaves, as well as its guard cells. In adult plant, detectable in stems, flowers, and siliques. {ECO:0000269|PubMed:17828375}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142636.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142636.10.0PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE
SwissprotQ9ZPY81e-141AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLA0A3P5Z5M80.0A0A3P5Z5M8_BRACM; Uncharacterized protein
TrEMBLM4CJZ80.0M4CJZ8_BRARP; Uncharacterized protein
STRINGBra004532.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-142ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Thatcher LF, et al.
    Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
    J. Exp. Bot., 2016. 67(8): p. 2367-86
    [PMID:26896849]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]