PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142597.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 313aa    MW: 36021 Da    PI: 8.87
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142597.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.4e-12153203154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +r++h  +Er+RR+++N  ++ Lr+l+P++   +  + + a+i+  A++++k L
  XP_009142597.1 153 QRMTHITVERNRRRQMNVYLSSLRSLIPSS---YILRGDQASIVGGAIDFVKLL 203
                     79****************************...9****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-15144213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.67E-10151208No hitNo description
Gene3DG3DSA:4.10.280.105.2E-12151208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.303152203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-9153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-8158209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEEKIQGQNK LSVSSLDQKV IVRRSLQVQG SSEDQRFVLE EDMMQQSEDL SSVLSVKDPN  60
FLRLLSLQTL QKPWELGDYL PHEVPEFHSP TNYYHQNPSL ERVNEAISSQ ELQLNPLRKR  120
RNNNNLVAAS VSREKRKRKR TKPTKNTEEM ESQRMTHITV ERNRRRQMNV YLSSLRSLIP  180
SSYILRGDQA SIVGGAIDFV KLLEQQLQSL EAQKVTQQTD TKDISLEQSS KLRIDATVIE  240
SHVNLKIQCP KKQGQLLRSI IWLEKLRFTV LHLNVTSPCN ATVSYSFNLK MEEDCTLTSA  300
DEITAAVRQI LDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118139KRRNNNNLVAASVSREKRKRKR
2135142RKRKRTKP
3153164RMTHITVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142597.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142597.10.0PREDICTED: transcription factor bHLH70 isoform X2
SwissprotO810371e-141BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A397Z5W80.0A0A397Z5W8_BRACM; Uncharacterized protein
STRINGBo4g006950.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-123bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]